miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio (zebrafish)
Length = 71
Score = 141 bits (71), Expect = 3e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 40 tcacaatccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttct 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacaatccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttct 60
Query: 100 tgggagctgag 110
|||||||||||
Sbjct: 61 tgggagctgag 71
>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
Length = 71
Score = 93.7 bits (47), Expect = 6e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
|||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgttgtgctgtgatgtgcacgggttgggttcttgggag 66
Query: 106 ctg 108
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 85.7 bits (43), Expect = 2e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
|||||||||||||||||||||||||||| || | ||||||||||||| || |||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgttttgctctgatgtgcacgggttgggctcttgggag 66
Query: 106 ctg 108
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
(green anole)
Length = 71
Score = 69.9 bits (35), Expect = 9e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
||||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgtttagtttttaagtccacgggttaggctcttgggag 66
Query: 106 ctg 108
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
|||||||||||||||||||||||||| | || | |||| |||||||| || ||| |||||
Sbjct: 7 tccctgagaccctaacttgtgacgttgttctttcatgtccacgggtttggctctcgggag 66
Query: 106 ctgag 110
|||||
Sbjct: 67 ctgag 71
>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
Length = 71
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
|||||||||||||||||||||||||| | || |||| |||||||| |||||| |||||
Sbjct: 7 tccctgagaccctaacttgtgacgttctgcttcgatgtccacgggttgggttctcgggag 66
Query: 106 ctg 108
|||
Sbjct: 67 ctg 69
>RF00052;lin-4;ABRQ01266683.1/74-144 9813:Procavia capensis (cape
rock hyrax)
Length = 71
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 43 caatccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgg 102
|||||||||||||||||| |||||| |||| || ||| | ||||||||||| ||||||
Sbjct: 4 caatccctgagaccctaatttgtgatgtttaccgtttaaatccacgggttaggctcttgg 63
Query: 103 gagctg 108
||||||
Sbjct: 64 gagctg 69
>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 70
Score = 54.0 bits (27), Expect = 5e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 105
|||||||||||||||||||||| |||| || ||| | ||||||||||| |||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgtttaccgtttaaat-cacgggttaggctcttgggag 65
Query: 106 ctg 108
|||
Sbjct: 66 ctg 68
>RF00052;lin-4;AAGJ02034255.1/5710-5639 7668:Strongylocentrotus
purpuratus
Length = 72
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 aatccctgagaccctaacttgtga 67
||||||||||||||||||||||||
Sbjct: 5 aatccctgagaccctaacttgtga 28
>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
(chicken)
Length = 71
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgtttt 73
|||||||||||||||||||||| |||||
Sbjct: 7 tccctgagaccctaacttgtgaggtttt 34
>RF00052;lin-4;AADG05003176.1/75746-75815 7460:Apis mellifera
(honey bee)
Length = 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 ccctgagaccctaacttgtgacgt 70
||||||||||||||||||||||||
Sbjct: 8 ccctgagaccctaacttgtgacgt 31
>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
shark)
Length = 71
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgacgttt 72
|||||||||||||||||||||| ||||
Sbjct: 7 tccctgagaccctaacttgtgatgttt 33
>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
S
Length = 70
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgac 68
|||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgac 29
>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
mojavensis
Length = 69
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtgac 68
|||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgac 29
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;CAAK05045496.1/11692-11621 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BAAE01206590.1/1293-1364 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;ABEP02005607.1/36374-36438 7739:Branchiostoma
floridae (Florida lancelet)
Length = 65
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AAZO01005184.1/24431-24501 121224:Pediculus humanus
corporis (human body louse)
Length = 71
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AAJJ01000960.1/11976-11909 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;ABJB010589032.1/2364-2293 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tccctgagaccctaacttgtga 67
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
