miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00649;mir-128;CAAK05046368.1/14745-14829 7955:Danio rerio
(zebrafish)
Length = 85
Score = 168 bits (85), Expect = 8e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 8 ggagtgctgggagacggggccgtggcactgtatgagattcatgtaggctttctcacagtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagtgctgggagacggggccgtggcactgtatgagattcatgtaggctttctcacagtg 60
Query: 68 aaccggtctctttttccagccctca 92
|||||||||||||||||||||||||
Sbjct: 61 aaccggtctctttttccagccctca 85
>RF00649;mir-128;AADN02016954.1/107412-107493 9031:Gallus gallus
(chicken)
Length = 82
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 tttctcacagtgaaccggtctctttttc 83
||||||||||||||||||||||||||||
Sbjct: 46 tttctcacagtgaaccggtctctttttc 73
>RF00649;mir-128;AAPN01333292.1/110-29 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttttc 83
||||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttttc 73
>RF00649;mir-128;ABPJ01009935.1/1344-1261 35575:Mchenga conophoros
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttttccagccctc 91
|||||||||||||||||||| |||||||||||||
Sbjct: 50 tctcacagtgaaccggtctc-ttttccagccctc 82
>RF00649;mir-128;AADN02001307.1/37422-37505 9031:Gallus gallus
(chicken)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttt 81
||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctctttt 73
>RF00649;mir-128;CAAK05043402.1/2817-2901 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttt 81
||||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctctttt 74
>RF00649;mir-128;CAAB01001230.1/17567-17484 31033:Takifugu
rubripes
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttt 81
||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctctttt 73
>RF00649;mir-128;BAAF04005951.1/319-236 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttt 81
||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctctttt 73
>RF00649;mir-128;BAAE01144804.1/712-628 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctctttt 81
||||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctctttt 74
>RF00649;mir-128;AAPN01083252.1/12750-12833 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctcttt 80
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
>RF00649;mir-128;AAYZ01088765.1/13723-13805 9978:Ochotona princeps
(American pika)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctcttt 80
|||||||||||||||||||||||
Sbjct: 49 tctcacagtgaaccggtctcttt 71
>RF00649;mir-128;AAVX01050759.1/9619-9536 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tctcacagtgaaccggtctcttt 80
|||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttt 72
