miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gtccttttcaggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtccttttcaggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaag 61
Query: 61 cccttaccccaaaaagtatctgcagaggac 90
||||||||||||||||||||||||||||||
Sbjct: 62 cccttaccccaaaaagtatctgcagaggac 91
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 113 bits (57), Expect = 4e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttaccccaa 73
Query: 73 aaagtatct 81
|||||||||
Sbjct: 74 aaagtatct 82
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 105 bits (53), Expect = 9e-23
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 77 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 18
Query: 73 aaagtatctgcag 85
|||||||||||||
Sbjct: 17 aaagtatctgcag 5
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 12 tctttttgcggtctgggcttgctgttcctctcagcagtagtcaggaagcccttaccccaa 71
Query: 73 aaagtatctgc 83
|||||||||||
Sbjct: 72 aaagtatctgc 82
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct: 12 ggtctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttacccc 71
Query: 71 aaaaagtatc 80
||||||||||
Sbjct: 72 aaaaagtatc 81
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
|||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttaaatcaccagtcaggaagcccttaccccaa 73
Query: 73 aaagtatctg 82
||||||||||
Sbjct: 74 aaagtatctg 83
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 93.7 bits (47), Expect = 4e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 12 ggtctttttgcggtctgggcttgctgttccta-aggaagtagccaggaagcccttacccc 70
Query: 71 aaaaagtatct 81
|||||||||||
Sbjct: 71 aaaaagtatct 81
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 85.7 bits (43), Expect = 9e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | ||| || |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctccagtcagcagtcaggaagcccttaccccaa 73
Query: 73 aaagtat 79
|||||||
Sbjct: 74 aaagtat 80
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctttgtccaacactcaggaagcccttaccccaa 73
Query: 73 aaagtat 79
|||||||
Sbjct: 74 aaagtat 80
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/81 (86%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 4 cttttcaggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagccc 63
|||||||||||||||||||||||||||||||||| | || || |||||||||||
Sbjct: 5 cttttcaggtctttttgcggtctgggcttgctgtcaagttaa----tatccaggaagccc 60
Query: 64 ttaccccaaaaagtatctgca 84
||||||||||||| |||||||
Sbjct: 61 ttaccccaaaaagcatctgca 81
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 cttttcaggtctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||||||||||
Sbjct: 5 cttttcaggtctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 65.9 bits (33), Expect = 8e-11
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 6 tttcaggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagccctt 65
||||||||||||||||||||||| |||||||| | ||| || | |||||||||||||
Sbjct: 7 tttcaggtctttttgcggtctggacttgctgtcacatga--ca--atccaggaagccctt 62
Query: 66 accccaaaaagtatctgca 84
||||||||||| |||||||
Sbjct: 63 accccaaaaagcatctgca 81
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtt 38
||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtt 39
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgct 35
|||||||||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgct 37
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ttttgcggtctgggcttgctgt 37
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggctt 32
||||||||||||||||||||||
Sbjct: 12 ggtctttttgcggtctgggctt 33
