miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gtctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaatgggaagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaatgggaagccc 61
Query: 61 ttaccccaaaaagcatttgcggagggc 87
|||||||||||||||||||||||||||
Sbjct: 62 ttaccccaaaaagcatttgcggagggc 88
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gtctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaa--tgggaagc 58
||||||| ||||||||||||||||||||||||||||||| || |||| | ||||||||
Sbjct: 2 gtctttcgcgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagc 61
Query: 59 ccttaccccaaaaagcatttgcgga 83
|||||||||||||||||||||||||
Sbjct: 62 ccttaccccaaaaagcatttgcgga 86
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 91.7 bits (46), Expect = 1e-18
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 5 ttcacgaatctttttgcggtctgggcttgctgttctcaactatcaat--gggaagccctt 62
||||| |||||||||||||||||||||||||||| | ||| ||| |||||||||||
Sbjct: 6 ttcacaaatctttttgcggtctgggcttgctgtttatgaatattaatctgggaagccctt 65
Query: 63 accccaaaaagcatttgcggagggc 87
|||||||||||||||||||||||||
Sbjct: 66 accccaaaaagcatttgcggagggc 90
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 83.8 bits (42), Expect = 3e-16
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaat--gggaagcccttaccc 66
||||||||||||||||||||||||||||| | ||||| | | |||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 69
Query: 67 caaaaagcatttgcggagggc 87
||||||||||| |||||||||
Sbjct: 70 caaaaagcattcgcggagggc 90
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 5 ttcacgaatctttttgcggtctgggcttgctgttctc 41
|||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttcacgaatctttttgcggtctgggcttgctgttctc 42
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/74 (89%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 6 tcacgaatctttttgcggtctgggcttgctgttc--tcaactatcaatgggaagccctta 63
|||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct: 7 tcacgaatctttttgcggtctgggcttgctgtgcattcattaatc--tgggaagccctta 64
Query: 64 ccccaaaaagcatt 77
||||||||||||||
Sbjct: 65 ccccaaaaagcatt 78
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 tcacgaatctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||||||||
Sbjct: 7 tcacgaatctttttgcggtctgggcttgctgt 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcatt 77
|||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcatt 77
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 gggaagcccttaccccaaaaagcatttgcggagg 85
|||||||||||||||||||||||||||| |||||
Sbjct: 57 gggaagcccttaccccaaaaagcatttgtggagg 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgct 35
|||||||||||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgct 37
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 10 gaatctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgttc 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcatttgcg 81
||||||||||||||||||||| |||||||
Sbjct: 57 ggaagcccttaccccaaaaagtatttgcg 85
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgttc 51
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgttc 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcatttgcgg 82
||||||||||||||||||||| || |||||
Sbjct: 55 ggaagcccttaccccaaaaagtatctgcgg 84
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcatttgcg 81
||||||||||||||||||||| |||||||
Sbjct: 57 ggaagcccttaccccaaaaagtatttgcg 85
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcat 76
||||||||||||||||||||||||
Sbjct: 52 ggaagcccttaccccaaaaagcat 75
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcat 76
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcat 76
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ttttgcggtctgggcttgctgt 37
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 aagcccttaccccaaaaagcat 76
||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83
