miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 2 gtctgtccagtgccccttttatattgtactactgataacccagttattaaagcagtgcaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctgtccagtgccccttttatattgtactactgataacccagttattaaagcagtgcaa 60
Query: 62 tgttaaaagggcattggccaggga 85
||||||||||||||||||||||||
Sbjct: 61 tgttaaaagggcattggccaggga 84
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 aaagcagtgcaatgttaaaagggcattggccag 82
|||||||||||||||||||||||||||||||||
Sbjct: 49 aaagcagtgcaatgttaaaagggcattggccag 81
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 50 aaagcagtgcaatgttaaaagggcattggccag 82
|||||||||||||||||||||||||||||||||
Sbjct: 35 aaagcagtgcaatgttaaaagggcattggccag 3
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 aaagcagtgcaatgttaaaagggcattggccag 82
|||||||||||||||||||||||||||||||||
Sbjct: 48 aaagcagtgcaatgttaaaagggcattggccag 80
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 aaagcagtgcaatgttaaaagggcattggccag 82
|||||||||||||||||||||||||||||||||
Sbjct: 45 aaagcagtgcaatgttaaaagggcattggccag 77
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 aagcagtgcaatgttaaaagggcattggccag 82
||||||||||||||||||||||||||||||||
Sbjct: 50 aagcagtgcaatgttaaaagggcattggccag 81
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggccagg 83
||||||||||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggccagg 81
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 gcagtgcaatgttaaaagggcattggcc 80
||||||||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggcc 75
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 aagcagtgcaatgttaaaagggcattgg 78
||||||||||||||||||||||||||||
Sbjct: 49 aagcagtgcaatgttaaaagggcattgg 76
>RF00258;mir-130;AANH01000530.1/26463-26380 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 49 taaagcagtgcaatgttaaaagggcattggcc 80
||||||||||||| ||||||||||||||||||
Sbjct: 48 taaagcagtgcaacgttaaaagggcattggcc 79
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggcc 80
|||||||||||||||||||||||| ||||
Sbjct: 49 agcagtgcaatgttaaaagggcatcggcc 77
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 aagcagtgcaatgttaaaagggcattggc 79
|||||||||||| ||||||||||||||||
Sbjct: 47 aagcagtgcaatattaaaagggcattggc 75
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 45 agcagtgcaatattaaaagggcattggc 72
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggc 79
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 aaagcagtgcaatgttaaaagggcattggccagg 83
|||||||||||||| | |||||||||||| ||||
Sbjct: 46 aaagcagtgcaatgatgaaagggcattggtcagg 79
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 52 agcagtgcaatgttaaaagggcattggcca 81
||||||||||| |||||||||||| |||||
Sbjct: 47 agcagtgcaattttaaaagggcatcggcca 76
