miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRO01142641.1/5547-5627 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 acactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagg 70
|||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||
Sbjct: 10 acactctttccctgttgcactactgtgg--gctgctggaaagcagtgcaatgatgaaagg 67
Query: 71 gcat 74
||||
Sbjct: 68 gcat 71
>RF00258;mir-130;AAFC03002359.1/2575-2495 9913:Bos taurus (cattle)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtg 37
|||||||||||||||||||||||||||||||||
Sbjct: 4 tgcctgacactctttccctgttgcactactgtg 36
>RF00258;mir-130;AAGU02694209.1/964-1044 9785:Loxodonta africana
(African savanna elephant)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 acactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagg 70
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 10 acactctttccctgttgcactactgtgg--gctgctaggaagcagtgcaatgatgaaagg 67
Query: 71 gcat 74
||||
Sbjct: 68 gcat 71
