miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 157 bits (79), Expect = 5e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 32 ttttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatatt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatatt 60
Query: 92 aaaagggcattggctgata 110
|||||||||||||||||||
Sbjct: 61 aaaagggcattggctgata 79
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 ttgtccaaagccctttttctgttgtactactgtgaaatcagatgagcagtgcaatattaa 60
Query: 94 aagggcattggctga 108
|||||||||||||||
Sbjct: 61 aagggcattggctga 75
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 99.6 bits (50), Expect = 1e-20
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 102
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 71
Query: 103 ggctga 108
||||||
Sbjct: 72 ggctga 77
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 95.6 bits (48), Expect = 2e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| |||||||||||||||| |||||||| || | || |||||||||||||||||
Sbjct: 3 ttgtccactgccctttttctgttgcactactggacattgggatgagcagtgcaatattaa 62
Query: 94 aagggcattggctgat 109
||||||||||||||||
Sbjct: 63 aagggcattggctgat 78
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| ||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct: 3 ttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaa 62
Query: 94 aagggcattggctg 107
||||||||||||||
Sbjct: 63 aagggcattggctg 76
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 87.7 bits (44), Expect = 4e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| ||||||||| || ||| |||||||| || | ||| |||||||||||||||||
Sbjct: 3 ttgtccactgcccttttcctcttgcactactggacattgagatgagcagtgcaatattaa 62
Query: 94 aagggcattggctgat 109
||||||||||||||||
Sbjct: 63 aagggcattggctgat 78
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 87.7 bits (44), Expect = 4e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| |||||||||||||||| |||||||| | | | | |||||||||||||||||
Sbjct: 3 ttgtccactgccctttttctgttgcactactggacgctgaaacgagcagtgcaatattaa 62
Query: 94 aagggcattggctgat 109
||||||||||||||||
Sbjct: 63 aagggcattggctgat 78
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcat 101
|||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||
Sbjct: 12 gccctttttctgttgtgctactgtgaaatcaggtgagcagtgcaattttaaaagggcat 70
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggctg 107
||||||||||||||||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggctg 77
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggc 6
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 35 tgtccattgccctttttctgttgtactact 64
|||||| |||||||||| ||||||||||||
Sbjct: 80 tgtccactgccctttttatgttgtactact 51
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 35 tgtccattgccctttttctgttgtactactgg 66
|||||| |||||||||| ||||||||||||||
Sbjct: 3 tgtccagtgccctttttatgttgtactactgg 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio (zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 gcagtgcaatattaaaagggcattggc 105
|||||||||| ||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattgg 104
||||||||||| |||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattgg 76
