miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 2 tgttgaccagggccctttttctgttgtactactgtgcagtcagatgagcagtgcaatatt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttgaccagggccctttttctgttgtactactgtgcagtcagatgagcagtgcaatatt 60
Query: 62 aaaagggcattggctgaca 80
|||||||||||||||||||
Sbjct: 61 aaaagggcattggctgaca 79
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 10 gccctttttctgttgtactactgtgaaatcagatgagcagtgcaatattaaaagggcatt 69
Query: 73 ggctgacaa 81
|||||||||
Sbjct: 70 ggctgacaa 78
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 99.6 bits (50), Expect = 5e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 71
Query: 73 ggctga 78
||||||
Sbjct: 72 ggctga 77
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 89.7 bits (45), Expect = 5e-18
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 tgttgaccagggccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatat 60
||||| |||| ||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 1 tgttgtccagagccctttttctgttgtactactg-gcaattatgatgagcagtgcaatat 59
Query: 61 taaaagggcattggctg 77
|||||||||||||||||
Sbjct: 60 taaaagggcattggctg 76
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgcactactggacattgggatgagcagtgcaatattaaaagggcatt 71
Query: 73 ggctga 78
||||||
Sbjct: 72 ggctga 77
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcat 71
|||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||
Sbjct: 12 gccctttttctgttgtgctactgtgaaatcaggtgagcagtgcaattttaaaagggcat 70
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 75.8 bits (38), Expect = 7e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
|||||||| || ||| ||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 12 gcccttttcctcttgcactactggacattgagatgagcagtgcaatattaaaagggcatt 71
Query: 73 ggctga 78
||||||
Sbjct: 72 ggctga 77
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgcactactggacgctgaaacgagcagtgcaatattaaaagggcatt 71
Query: 73 ggctga 78
||||||
Sbjct: 72 ggctga 77
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 tgttgaccagggccctttttctgttgtactactgtgcagtc-agatgagcagtgcaatat 60
||||| || |||||||||| ||||||||||||| | ||| || | |||||||||||||
Sbjct: 1 tgttgtccggggcccttttcatgttgtactactgggaagttgagttaagcagtgcaatat 60
Query: 61 taaaagggcattggctg 77
|||||||||||||||||
Sbjct: 61 taaaagggcattggctg 77
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggc 6
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 gcagtgcaatattaaaagggcattggc 75
|||||||||| ||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattgg 74
||||||||||| |||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattgg 76
