miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;BX088586.8/108540-108629 7955:Danio rerio
(zebrafish)
Length = 90
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gtctccatggcgaccgtggcattagattgttactgtaggaacagaatttttggtaacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gtctccatggcgaccgtggcattagattgttactgtaggaacagaatttttggtaacagt 63
Query: 61 ctacagccatggtcgctagtgggca 85
|||||||||||||||||||||||||
Sbjct: 64 ctacagccatggtcgctagtgggca 88
>RF00662;mir-132;BAAE01031130.1/4187-4276 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 1 gtctccatggcgaccgtggcattagattgttactgtaggaacagaatttttggtaacagt 60
|||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct: 4 gtctccatggtaaccgtggcattagattgttactgtagcaacagcaccactggtaacagt 63
Query: 61 ctacagccatggtcgctagtgggca 85
||||||||||||||||||| |||||
Sbjct: 64 ctacagccatggtcgctagggggca 88
>RF00662;mir-132;BAAE01045097.1/6371-6283 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gtctccatggcgaccgtggcattagattgttactgtaggaacagaatttttggtaacagt 60
|||||||||||||||||||| ||||||||||||| ||| || || | | ||||||||||
Sbjct: 4 gtctccatggcgaccgtggctttagattgttactctagcaaaagca-ctgtggtaacagt 62
Query: 61 ctacagccatggtcg 75
|||||||||||||||
Sbjct: 63 ctacagccatggtcg 77
>RF00662;mir-132;CAAB01000451.1/6761-6672 31033:Takifugu rubripes
Length = 90
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gtctccatggcgaccgtggcattagattgttact 34
|||||||||||||||||||| |||||||||||||
Sbjct: 4 gtctccatggcgaccgtggctttagattgttact 37
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tggtaacagtctacagccatggtcg 75
|||||||||||||||||||||||||
Sbjct: 54 tggtaacagtctacagccatggtcg 78
>RF00662;mir-132;CAAK05007784.1/3165-3252 7955:Danio rerio
(zebrafish)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 gtctccatggcgaccgtggcattagattgttactgtag 38
||||||||| ||||||||| |||||||||||||||||
Sbjct: 4 gtctccatgctgaccgtggctttagattgttactgtag 41
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tggtaacagtctacagccatggtcgc 76
||||||||||||||||||||||||||
Sbjct: 52 tggtaacagtctacagccatggtcgc 77
>RF00662;mir-132;ABDC01230941.1/4406-4323 30608:Microcebus murinus
(gray mouse lemur)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ggtaacagtctacagccatggtcgc 76
|||||||||||||||||||||||||
Sbjct: 49 ggtaacagtctacagccatggtcgc 73
>RF00662;mir-132;AADB02296530.1/487-405 9606:Homo sapiens (human)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ggtaacagtctacagccatggtcgc 76
|||||||||||||||||||||||||
Sbjct: 49 ggtaacagtctacagccatggtcgc 73
>RF00662;mir-132;ABRQ01002353.1/3260-3176 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ggtaacagtctacagccatggtcgc 76
|||||||||||||||||||||||||
Sbjct: 51 ggtaacagtctacagccatggtcgc 75
