miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 168 bits (85), Expect = 8e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 cacggcttagttgctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacggcttagttgctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccct 60
Query: 65 ttcaaccagctactgcgccgtgaat 89
|||||||||||||||||||||||||
Sbjct: 61 ttcaaccagctactgcgccgtgaat 85
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 101 bits (51), Expect = 1e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 17 gctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccctttcaaccagcta 76
|||||| ||||||||||||||| ||||||| | ||||||||||||| ||||||||||||
Sbjct: 15 gctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagcta 74
Query: 77 ctgcgccgtgaattc 91
|||||||||||||||
Sbjct: 75 ctgcgccgtgaattc 89
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 17 gctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccctttcaaccagcta 76
|||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct: 15 gctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaaccagcta 74
Query: 77 ctgcgccgtgaat 89
||||| |||||||
Sbjct: 75 ctgcgtcgtgaat 87
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 gagaggtttggtccctttcaaccagctac 77
||||||||||||||| |||||||||||||
Sbjct: 46 gagaggtttggtccccttcaaccagctac 74
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 gaggtttggtccctttcaaccagcta 76
||||||||||||| ||||||||||||
Sbjct: 48 gaggtttggtccccttcaaccagcta 73
