miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 acagctgtcgtgtcttatggctttttattcctatgtgaaggtgaacaaggctcatgtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acagctgtcgtgtcttatggctttttattcctatgtgaaggtgaacaaggctcatgtagg 61
Query: 61 gatacaagccactaaacacgcagtcagaa 89
|||||||||||||||||||||||||||||
Sbjct: 62 gatacaagccactaaacacgcagtcagaa 90
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 10 gtgtcttatggctttttattcctatgtgaaggtgaacaaggctcatgtagg 60
|||| |||||||||||||||||||||||| |||||| || | |||||||||
Sbjct: 11 gtgtattatggctttttattcctatgtgatggtgaaaaatgttcatgtagg 61
>RF00246;mir-135;BAAE01235973.1/746-658 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 gctgtcgtgtcttatggctttttattcctatgtga 38
||||| |||||||||||||||||||||||| ||||
Sbjct: 5 gctgttgtgtcttatggctttttattcctacgtga 39
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 10 gtgtcttatggctttttattcctatgtgaaggtgaacaaggctcatgtagggat 63
|||| |||||||||||||||||||||||| || | ||| |||||||||||||
Sbjct: 11 gtgttttatggctttttattcctatgtgatagtaataaagtctcatgtagggat 64
>RF00246;mir-135;CAAB01000045.1/261436-261345 31033:Takifugu
rubripes
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtgtcttatggctttttattcctatgtga 38
||||||||||||||| |||||||||||||
Sbjct: 11 gtgtcttatggctttctattcctatgtga 39
>RF00246;mir-135;AANH01002554.1/13894-13804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtgtcttatggctttttattcctatgtga 38
||||||||||||||| |||||||||||||
Sbjct: 11 gtgtcttatggctttctattcctatgtga 39
>RF00246;mir-135;BAAF04004921.1/4146-4237 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtgtcttatggctttttattcctatgtga 38
||||||||||||||| |||||||||||||
Sbjct: 11 gtgtcttatggctttctattcctatgtga 39
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ttatggctttttattcctatgtga 38
||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtga 39
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ttatggctttttattcctatgtga 38
||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtga 39
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgaaggtg 43
||||||||||||||||||||||| ||||
Sbjct: 17 tatggctttttattcctatgtgatggtg 44
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;ABPM01018522.1/117-27 106582:Maylandia zebra
(zebra mbuna)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gtcttatggctttttattcctatgtga 38
||||||||||||| |||||||||||||
Sbjct: 13 gtcttatggctttctattcctatgtga 39
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;BAAF04010906.1/5360-5272 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tcttatggctttttattcctatgtga 38
|||||||||||| |||||||||||||
Sbjct: 14 tcttatggctttctattcctatgtga 39
