miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 tgctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggtt 66
Query: 61 caaagccattgggtacagag 80
||||||||||||||||||||
Sbjct: 67 caaagccattgggtacagag 86
>RF00246;mir-135;BAAF04004921.1/4146-4237 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 tgctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggtt 60
|||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 7 tgctgtgtcttatggctttctattcctatgtgatttttctctggcatgtcacatagggtc 66
Query: 61 caaagccattgggtacagag 80
||||||||||||| |||||
Sbjct: 67 taaagccattgggtgcagag 86
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 75.8 bits (38), Expect = 7e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 3 ctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggttca 62
||||| ||||||||||||||||||||||||||||| | || || ||| |||||||||
Sbjct: 9 ctgtgctttatggctttctattcctatgtgattttgatatgatgtatcatgtagggttca 68
Query: 63 aagccattgggtacagag 80
|||||||| |||||||||
Sbjct: 69 aagccattaggtacagag 86
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtgttttatggctttctattcctatgtgat 34
||||||||||||||| ||||||||||||||
Sbjct: 11 gtgttttatggctttttattcctatgtgat 40
>RF00246;mir-135;CAAB01000045.1/261436-261345 31033:Takifugu
rubripes
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 tgtgttttatggctttctattcctatgtga 33
||||| ||||||||||||||||||||||||
Sbjct: 10 tgtgtcttatggctttctattcctatgtga 39
>RF00246;mir-135;AANH01002554.1/13894-13804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 tgtgttttatggctttctattcctatgtga 33
||||| ||||||||||||||||||||||||
Sbjct: 10 tgtgtcttatggctttctattcctatgtga 39
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ctgtgttttatggctttctattcctatgtgatt 35
||||| ||||||||||| |||||||||||||||
Sbjct: 9 ctgtgctttatggctttttattcctatgtgatt 41
>RF00246;mir-135;ABPM01018522.1/117-27 106582:Maylandia zebra
(zebra mbuna)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttatggctttctattcctatgtga 33
||||||||||||||||||||||||
Sbjct: 16 ttatggctttctattcctatgtga 39
>RF00246;mir-135;BAAF04010906.1/5360-5272 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttatggctttctattcctatgtga 33
||||||||||||||||||||||||
Sbjct: 16 ttatggctttctattcctatgtga 39
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 tgctgtgttttatggctttctattcctatgtgatt 35
||||||| | ||||||||| |||||||||||||||
Sbjct: 7 tgctgtggtctatggctttttattcctatgtgatt 41
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 tgtgttttatggctttctattcctatgtgat 34
||||| |||||||||| ||||||||||||||
Sbjct: 10 tgtgtattatggctttttattcctatgtgat 40
