miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
(zebrafish)
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 18 tataaaggactctcttcggtgacgggtattcttgggtggataatacggctctcgttgtta 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tataaaggactctcttcggtgacgggtattcttgggtggataatacggctctcgttgtta 60
Query: 78 ttgcttaagaatacgcgtagtcgaggagagtcatgtcggc 117
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgcttaagaatacgcgtagtcgaggagagtcatgtcggc 100
>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
(zebrafish)
Length = 100
Score = 161 bits (81), Expect = 3e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 27 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
Query: 87 aatacgcgtagtcgaggagagtcat 111
|||||||||||| ||||||||||||
Sbjct: 70 aatacgcgtagttgaggagagtcat 94
>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 145 bits (73), Expect = 2e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 25 gactctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgctta 84
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 8 gactctcttcggtgacgggtattcttgggtggataatacggatcacgttgttattgctta 67
Query: 85 agaatacgcgtagtcgaggagagtc 109
|||||||||||||| ||||||||||
Sbjct: 68 agaatacgcgtagttgaggagagtc 92
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
(chicken)
Length = 100
Score = 143 bits (72), Expect = 6e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 25 gactctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgctta 84
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 8 gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 67
Query: 85 agaatacgcgtagtcgaggagagt 108
||||||||||||||||||||||||
Sbjct: 68 agaatacgcgtagtcgaggagagt 91
>RF00694;mir-137;ABRO01064648.1/7203-7302 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 119 bits (60), Expect = 9e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 25 gactctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgctta 84
|||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 8 gactctattcggtgacgggtattcttgggtggataatacggattacgttgttatagctta 67
Query: 85 agaatacgcgtagtcgaggagagt 108
|||||||| |||||||||||||||
Sbjct: 68 agaatacgtgtagtcgaggagagt 91
>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 79.8 bits (40), Expect = 8e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 32 ttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatac 91
|||| |||||||||||||||||| ||||||||| | || ||||||||||| |||||||
Sbjct: 15 ttcgatgacgggtattcttgggtacataatacggatggcgctgttattgcttgagaatac 74
Query: 92 gcgtagtcgagg 103
||||||||||||
Sbjct: 75 gcgtagtcgagg 86
>RF00694;mir-137;AJ324266.1/117-18 9606:Homo sapiens (human)
Length = 100
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 33 tcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacg 92
||||||||||||||||||||||||||||| ||| | ||||||||| | |||||||||||
Sbjct: 16 tcggtgacgggtattcttgggtggataatccggatgacgttgttatggtttaagaatacg 75
>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon nigroviridis
Length = 98
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 39 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 98
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 81
Query: 99 cgag 102
||||
Sbjct: 82 cgag 85
>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
fuelleborni
Length = 101
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 39 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 98
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 23 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 82
Query: 99 cgag 102
||||
Sbjct: 83 cgag 86
>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
(Japanese medaka)
Length = 98
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 39 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 98
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatatggatgttattgcttgagaatacgcgtagt 81
Query: 99 cgag 102
||||
Sbjct: 82 cgag 85
>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 69.9 bits (35), Expect = 8e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 39 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtag 97
|||||||||||||||| |||||||| | | ||| ||||||||||| |||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtcgatgttattgcttgagaatacgcgtag 80
>RF00694;mir-137;ABVD01008873.1/1869-1971 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 25 gactctcttcggtgacgggtattcttgggtggataatacgg 65
|||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 8 gactctcttcagtgacggatattcttgggtggataatacgg 48
>RF00694;mir-137;AAWZ01010620.1/48359-48459 28377:Anolis
carolinensis (green anole)
Length = 101
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 39 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 98
|||||||||||||||| ||||||| | | |||||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggtatataatacagatggcgttgttattgcttgagaatacgcgtagt 81
Query: 99 cgagg 103
||||
Sbjct: 82 tgagg 86
>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 101
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 37 tgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgta 96
|||||||||||||||||| |||||||| | || ||||||||||| ||||||| ||||
Sbjct: 20 tgacgggtattcttgggtagataataccaatggcgctgttattgcttgagaatacacgta 79
Query: 97 gtcgagg 103
|||||||
Sbjct: 80 gtcgagg 86
