miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00703;mir-139;CAAK05025129.1/176-108 7955:Danio rerio
(zebrafish)
Length = 69
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctgtattctacagtgcatgtgtctccagtgtttctatggcgactggggaggcagcgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtattctacagtgcatgtgtctccagtgtttctatggcgactggggaggcagcgctgt 60
Query: 61 tggaataac 69
|||||||||
Sbjct: 61 tggaataac 69
>RF00703;mir-139;AAWZ01039822.1/26175-26108 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctgtattctacagtgcatgtgtctccagtgttt 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtattctacagtgcatgtgtctccagtgttt 33
>RF00703;mir-139;ABQF01042738.1/622-689 59729:Taeniopygia guttata
Length = 68
Score = 61.9 bits (31), Expect = 9e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||||||||||||||||||
Sbjct: 1 ctgtattctacagtgcatgtgtctccagtgt 31
>RF00703;mir-139;BAAE01265569.1/1354-1284 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ctgtattctacagtgcatgtgtctccagt 29
|||||||||||||||||||||||||||||
Sbjct: 1 ctgtattctacagtgcatgtgtctccagt 29
>RF00703;mir-139;AAPN01104066.1/4648-4582 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccag 28
|||| ||||||||||||||||||||||
Sbjct: 2 tgtagtctacagtgcatgtgtctccag 28
>RF00703;mir-139;ABRQ01007008.1/2766-2833 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||| ||||||||||| |||||||||||||
Sbjct: 2 tgtactctacagtgcacgtgtctccagtgt 31
