miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 141 bits (71), Expect = 2e-33
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 6 tgtctcctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctacc 65
||||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 5 tgtctccggtgtcacgtcagtggttttaccctatggtaggtgacatcatgctgttctacc 64
Query: 66 acagggtagaaccacggacgggatgtctggaggtg 100
|||||||||||||||||||||||||| |||||||
Sbjct: 65 acagggtagaaccacggacgggatgttgggaggtg 99
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 14 gtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 71
Query: 74 gaaccacggacgggatg 90
|||||||||||||||||
Sbjct: 72 gaaccacggacgggatg 88
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 123 bits (62), Expect = 5e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 80
Query: 83 ac 84
||
Sbjct: 81 ac 82
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 117 bits (59), Expect = 3e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtaggttacatcatgctgttctaccacagggtagaaccacgg 80
Query: 83 acgggat 89
|| ||||
Sbjct: 81 acaggat 87
