miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 4 tctagggtacatcttacctgacagtgcttggctgttcactgatgttctaacactgtctgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctagggtacatcttacctgacagtgcttggctgttcactgatgttctaacactgtctgg 60
Query: 64 taacgatgcactctggt 80
|||||||||||||||||
Sbjct: 61 taacgatgcactctggt 77
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 tctagggtacatcttacctgacagtgcttggctgttca-ctgatgttctaacactgtctg 62
|||||| | ||||||||||||||||| | | |||| || ||| || ||||||||||||||
Sbjct: 1 tctaggatccatcttacctgacagtgatggactgtacagctgttgctctaacactgtctg 60
Query: 63 gtaacgatg 71
|||||||||
Sbjct: 61 gtaacgatg 69
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tgttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||||
Sbjct: 44 tgttctaacactgtctggtaacgatg 69
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgc 72
||||||||||||||||||||||||
Sbjct: 45 tctaacactgtctggtaacgatgc 68
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatg 68
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatg 68
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatg 68
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatg 68
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 44 tctaacactgtctggtaacgatg 66
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 45 tctaacactgtctggtaacgatg 67
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 43 tctaacactgtctggtaacgatg 65
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatg 68
