miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 9 gtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcctactt 68
||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 69 tatggatgagt 79
|||||||||||
Sbjct: 79 tatggatgagt 89
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 70
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtt 70
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 69
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 70 tcctactttatggatgagtgtactgt 95
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 81.8 bits (41), Expect = 1e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 cataaagtagacagcactactaaacttctctacaca-gtgtagtgtttcctactttatgg 73
||||||||||| ||||||||||||| || | | || |||||||||||||||||||||||
Sbjct: 25 cataaagtagaaagcactactaaacgcctgtgcccaagtgtagtgtttcctactttatgg 84
Query: 74 atgagtgtactgt 86
|||||||||||||
Sbjct: 85 atgagtgtactgt 97
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| ||||||||||| | || | ||||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaccatcc--aatcagtgtagtgtt 68
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||| ||||| |||||
Sbjct: 69 tcctactttatggacgagtgcactgt 94
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||| ||| | || | ||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtt 69
Query: 61 tcctactttatggatga 77
|||||||||||||||||
Sbjct: 70 tcctactttatggatga 86
