miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00683;mir-143;CU234179.11/36731-36626 7955:Danio rerio
(zebrafish)
Length = 106
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gatctacagtcgtctggcccgcggtgcagtgctgcatctctggtcaactgggagtctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gatctacagtcgtctggcccgcggtgcagtgctgcatctctggtcaactgggagtctgag 64
Query: 61 atgaagcactgtagctcgggaggacaacactgtcagctc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atgaagcactgtagctcgggaggacaacactgtcagctc 103
>RF00683;mir-143;AALT01067568.1/1202-1307 42254:Sorex araneus
(European shrew)
Length = 106
Score = 101 bits (51), Expect = 2e-21
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AAGW01160071.1/967-862 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 101 bits (51), Expect = 2e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAIY01705731.1/1779-1674 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 101 bits (51), Expect = 2e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;CAAB01002152.1/24278-24172 31033:Takifugu
rubripes
Length = 107
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 15 tggcccgcggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtag 74
|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 19 tggcccacggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtag 78
Query: 75 ctcggga 81
|||||||
Sbjct: 79 ctcggga 85
>RF00683;mir-143;AAFR03012464.1/24867-24972 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 17 gcccgcggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagct 76
||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 21 gcccgaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagct 80
Query: 77 cggga 81
|||||
Sbjct: 81 cggga 85
>RF00683;mir-143;AAPN01425211.1/1518-1413 9258:Ornithorhynchus
anatinus (platypus)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAPE01221912.1/1898-1793 59463:Myotis lucifugus
(little brown bat)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AC148011.3/33883-33988 10090:Mus musculus (house
mouse)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AAWZ01000591.1/16242-16347 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;ABPL01011624.1/1446-1341 27751:Melanochromis
auratus
Length = 106
Score = 93.7 bits (47), Expect = 4e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AANH01007327.1/1417-1521 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 105
Score = 93.7 bits (47), Expect = 4e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;BAAE01019938.1/1252-1147 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgatagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAVX01064725.1/2024-2127 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcgggag 82
|||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||
Sbjct: 27 ggtgcagtgctgcatctctggttagttgtgagtctgagatgaagcactgtagctctggag 86
Query: 83 ga 84
||
Sbjct: 87 ga 88
