miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 15 ttcctcatccccggggtccagttttcccaggaatcccttgggcaatcgaaagggggattc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcctcatccccggggtccagttttcccaggaatcccttgggcaatcgaaagggggattc 60
Query: 75 ctggaaatactgttcttggggttgggggt 103
|||||||||||||||||||||||||||||
Sbjct: 61 ctggaaatactgttcttggggttgggggt 89
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 99.6 bits (50), Expect = 8e-21
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 27 ggggtccagttttcccaggaatcccttgggcaatc-gaaagggggattcctggaaatact 85
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 13 ggggtccagttttcccaggaatcccttgacctatcagaaagggggattcctggaaatact 72
Query: 86 gttcttgggg 95
||||||||||
Sbjct: 73 gttcttgggg 82
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 87.7 bits (44), Expect = 3e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 27 ggggtccagttttcccaggaatcccttgggcaatc-gaaagggggattcctggaaatact 85
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 13 ggggtccagttttcccaggaatcccttgggctgtcaaaaaaggggattcctggaaatact 72
Query: 86 gttcttggggttgggg 101
| |||||||| |||||
Sbjct: 73 gatcttgggggtgggg 88
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 77.8 bits (39), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 26 cggggtccagttttcccaggaatcccttgggcaatcgaaagggggattcctggaaatact 85
|||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct: 13 cggggtccagttttcccaggaatcccttagatgata-agagggggattcctggaaatact 71
Query: 86 gttcttggggt 96
|||||||||||
Sbjct: 72 gttcttggggt 82
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 58.0 bits (29), Expect = 3e-08
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 26 cggggtccagttttcccaggaatcccttgggcaatcgaa-agggggattcctggaaatac 84
|||||||||||||||||||||||||||| | | | || | ||||||||||||||||||
Sbjct: 13 cggggtccagttttcccaggaatcccttag--atgctaagatggggattcctggaaatac 70
Query: 85 tgttcttg 92
||||||||
Sbjct: 71 tgttcttg 78
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
