miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;CT025772.15/118748-118837 7955:Danio rerio
(zebrafish)
Length = 90
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 10 ttgagcacttttccctgagaactgaattccatagatggtgttcatgaaaagttcatctat 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgagcacttttccctgagaactgaattccatagatggtgttcatgaaaagttcatctat 60
Query: 70 gggctcagttcttctggcaatctgtttaat 99
||||||||||||||||||||||||||||||
Sbjct: 61 gggctcagttcttctggcaatctgtttaat 90
>RF00691;mir-146;CAAE01015006.1/213889-213798 99883:Tetraodon
nigroviridis
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgagaactgaattccatagatggtg 49
|||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatagatggtg 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tcatctatgggctcagttcttctggc 87
||||||||||||||||||||| ||||
Sbjct: 54 tcatctatgggctcagttcttttggc 79
>RF00691;mir-146;CAAB01000022.1/128997-128906 31033:Takifugu
rubripes
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgagaactgaattccatagatggtg 49
|||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatagatggtg 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ttcatctatgggctcagttcttctggc 87
|||||||||||||||||||||| ||||
Sbjct: 53 ttcatctatgggctcagttcttttggc 79
>RF00691;mir-146;ABPM01045775.1/524-434 106582:Maylandia zebra
(zebra mbuna)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgagaactgaattccatagatggtg 49
|||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatagatggtg 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 tcatctatgggctcagttcttctggca 88
||||||||||||||||||||| |||||
Sbjct: 54 tcatctatgggctcagttcttttggca 80
>RF00691;mir-146;AANH01005121.1/10850-10759 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgagaactgaattccatagatggtg 49
|||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatagatggtg 40
>RF00691;mir-146;BAAE01103753.1/1540-1630 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgagaactgaattccatagatggt 48
||||||||||||||||||||||||
Sbjct: 16 tgagaactgaattccatagatggt 39
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 tcatctatgggctcagttcttctggca 88
||||||||||||||||||||| |||||
Sbjct: 54 tcatctatgggctcagttcttttggca 80
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ccctgagaactgaattccatag 43
||||||||||||||||||||||
Sbjct: 13 ccctgagaactgaattccatag 34
