miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ctttccaagtaaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctttccaagtaaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattac 64
Query: 61 agaactttgttttgggagt 79
|||||||||||||||||||
Sbjct: 65 agaactttgttttgggagt 83
>RF00248;mir-148;BAAE01176122.1/4975-4889 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 111 bits (56), Expect = 1e-24
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ctttccaagtaaagttctgtgatacactccgactctgaa-tgtttgcagtcagtgcatta 59
|||||||| |||||||||||||||||||| |||||| || || |||||||||||||||||
Sbjct: 5 ctttccaaataaagttctgtgatacactcagactcttaactgcttgcagtcagtgcatta 64
Query: 60 cagaactttgttttgggagt 79
||||||||||||||||||||
Sbjct: 65 cagaactttgttttgggagt 84
>RF00248;mir-148;CAAB01000281.1/110896-110981 31033:Takifugu
rubripes
Length = 86
Score = 85.7 bits (43), Expect = 7e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 1 ctttccaagtaaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattac 60
|||||||| ||||||||||||||||||| |||||| | | ||||||||||||||||
Sbjct: 5 ctttccaaataaagttctgtgatacacttagactctagttcctcgcagtcagtgcattac 64
Query: 61 agaactttgttttgggagt 79
|||||||||||||||||||
Sbjct: 65 agaactttgttttgggagt 83
>RF00248;mir-148;ABPM01044053.1/712-797 106582:Maylandia zebra
(zebra mbuna)
Length = 86
Score = 79.8 bits (40), Expect = 5e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 ctttccaagtaaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattac 60
|||||||| ||||||||||||||||||| |||||| | || ||||||||||||||||
Sbjct: 5 ctttccaaataaagttctgtgatacacttagactctaactgcccgcagtcagtgcattac 64
Query: 61 agaactttgttt 72
||||||||||||
Sbjct: 65 agaactttgttt 76
>RF00248;mir-148;BAAF04090171.1/757-675 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 73.8 bits (37), Expect = 3e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 11 aaagttctgtgatacactccgactctgaatgtttgc-agtcagtgcattacagaactttg 69
||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||
Sbjct: 14 aaagttctgtgatacactcagactgtgaatgtttgctggtcagtgcataacagaactttg 73
Query: 70 t 70
|
Sbjct: 74 t 74
>RF00248;mir-148;AANH01009869.1/35146-35060 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaatgtttgc-agtcagtgcattacagaactttg 69
|||||||||||||||||| |||| ||||| | ||| ||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatctatgctagtcagtgcataacagaactttg 74
>RF00248;mir-148;CAAE01018438.1/624-536 99883:Tetraodon
nigroviridis
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaatg--tttgc-agtcagtgcattacagaacttt 68
|||||||||||||||||| |||| |||||| | ||| ||||||||||| ||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatggctatgctagtcagtgcataacagaacttt 75
Query: 69 gt 70
||
Sbjct: 76 gt 77
>RF00248;mir-148;CAAB01001992.1/19212-19128 31033:Takifugu
rubripes
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaatgttt--gc-agtcagtgcattacagaacttt 68
|||||||||||||||||| |||| ||||||| | || ||||||||||| ||||||||||
Sbjct: 15 aagttctgtgatacactctgactgtgaatgtctatgctagtcagtgcataacagaacttt 74
Query: 69 gt 70
||
Sbjct: 75 gt 76
>RF00248;mir-148;AAVX01026781.1/2013-1926 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgttttgggag 78
||||||||||| |||||||||||| |||||||
Sbjct: 53 agtcagtgcataacagaactttgtcttgggag 84
>RF00248;mir-148;AAGU02053377.1/4604-4519 9785:Loxodonta africana
(African savanna elephant)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 26 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 74
>RF00248;mir-148;AADN02000964.1/27361-27276 9031:Gallus gallus
(chicken)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactttgt 70
|||||||||||| |||||||||||||
Sbjct: 49 gcagtcagtgcactacagaactttgt 74
>RF00248;mir-148;BX546447.8/63945-64030 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 gtcagtgcattacagaactttg 69
||||||||||||||||||||||
Sbjct: 52 gtcagtgcattacagaactttg 73
