miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00767;mir-150;AL928885.9/188180-188093 7955:Danio rerio
(zebrafish)
Length = 88
Score = 125 bits (63), Expect = 9e-29
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 catctccgtctctcccaatccttgtaccagtgtctgatttacagatgacgctggacgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 catctccgtctctcccaatccttgtaccagtgtctgatttacagatgacgctggacgggg 64
Query: 61 ttt 63
|||
Sbjct: 65 ttt 67
>RF00767;mir-150;AANH01011205.1/15427-15513 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctcccaatccttgtaccagtgtc 34
|||||||||||||||||||||||
Sbjct: 17 ctcccaatccttgtaccagtgtc 39
>RF00767;mir-150;BAAF04085915.1/8978-9063 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctcccaatccttgtaccagtgtc 34
|||||||||||||||||||||||
Sbjct: 17 ctcccaatccttgtaccagtgtc 39
>RF00767;mir-150;AAVX01101656.1/398-309 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 tctccgtctctcccaatccttgtaccagtgt 33
||||| |||||||||| ||||||||||||||
Sbjct: 10 tctccctctctcccaacccttgtaccagtgt 40
