miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;CR450718.10/98432-98517 7955:Danio rerio
(zebrafish)
Length = 86
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 2 tgttcacctggctcaagttctgtgatacactcagactttgaatcagtggtagtcagtgca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttcacctggctcaagttctgtgatacactcagactttgaatcagtggtagtcagtgca 60
Query: 62 tgacagaactttggcccgg 80
|||||||||||||||||||
Sbjct: 61 tgacagaactttggcccgg 79
>RF00248;mir-148;AANH01009869.1/35146-35060 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
|||||||||||||||||| |||| |||||| || |||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatctatgctagtcagtgcataacagaactttg 74
>RF00248;mir-148;BAAF04090171.1/757-675 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttgg 75
||||||||||||||||||||||| ||||| || | |||||||||| |||||||||||
Sbjct: 15 aagttctgtgatacactcagactgtgaatgtttgctggtcagtgcataacagaactttgt 74
Query: 76 cccgg 80
|||||
Sbjct: 75 cccgg 79
>RF00248;mir-148;CAAE01018438.1/624-536 99883:Tetraodon
nigroviridis
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaat--cagtggtagtcagtgcatgacagaacttt 73
|||||||||||||||||| |||| ||||| | || |||||||||||| ||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatggctatgctagtcagtgcataacagaacttt 75
Query: 74 ggcccgg 80
| |||||
Sbjct: 76 gtcccgg 82
>RF00248;mir-148;CAAB01001992.1/19212-19128 31033:Takifugu
rubripes
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaat--cagtggtagtcagtgcatgacagaacttt 73
|||||||||||||||||| |||| ||||| | || |||||||||||| ||||||||||
Sbjct: 15 aagttctgtgatacactctgactgtgaatgtctatgctagtcagtgcataacagaacttt 74
Query: 74 ggcccgg 80
| |||||
Sbjct: 75 gtcccgg 81
>RF00248;mir-148;AAFR03029848.1/1033-1118 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 18 gttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactt 72
|||||||||||||||| ||||| || || | | |||||||||||||||||||||
Sbjct: 17 gttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaactt 71
>RF00248;mir-148;AC149872.2/128226-128140 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
||||||||| |||||||| | || ||| | ||||| ||||||||||| |||||||||||
Sbjct: 16 aagttctgttatacactccggctgtgagtaagtggaagtcagtgcatcacagaactttg 74
>RF00248;mir-148;ABRQ01001566.1/8621-8537 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 18 gttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttggcc 77
||||||||||||||||||||| | || | | ||||||||||||||||||||| ||||
Sbjct: 17 gttctgtgatacactcagactcgggctctggagcagtcagtgcatgacagaacttgggcc 76
Query: 78 cg 79
||
Sbjct: 77 cg 78
>RF00248;mir-148;ABRQ01025756.1/6963-6877 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
||||||||| |||||||||| || || || ||| ||||||||||| |||||||||||
Sbjct: 16 aagttctgttatacactcaggctgtggctctgtgaaagtcagtgcatcacagaactttg 74
>RF00248;mir-148;AAWZ01034152.1/31480-31394 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
||||||||| |||||||| |||| || | |||| ||||||||||| |||||||||||
Sbjct: 16 aagttctgttatacactctgactgtggctatgtggaagtcagtgcatcacagaactttg 74
>RF00248;mir-148;BAAE01176122.1/4975-4889 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagact 38
|||||||||||||||||||||||
Sbjct: 16 aagttctgtgatacactcagact 38
