miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 ggttgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 ggttgccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtca 63
Query: 61 caaaagtgatcattgga 77
|||||||||||||||||
Sbjct: 64 caaaagtgatcattgga 80
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 7 cagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaag 66
|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 10 cagtgtcatttttgtgat-ttgcagctagtaatcctggcccagttgcatagtcacaaaag 68
Query: 67 tgatcattgg 76
||||||||||
Sbjct: 69 tgatcattgg 78
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 7 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 65
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 66 aagtgatcattgg 78
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 11 gtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtgat 70
|||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 72
Query: 71 cattgg 76
| ||||
Sbjct: 73 cgttgg 78
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
||||||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 67
Query: 66 gtgatcattgg 76
||| ||||||
Sbjct: 68 atgagcattgg 78
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 ccagttgcatagtcacaaaagtgatcat 73
|||||||||||||||||||| |||||||
Sbjct: 48 ccagttgcatagtcacaaaaatgatcat 75
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaagtgat 70
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaagtgatcat 73
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
