miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 60
Query: 90 cacaaaaatgagcacagacagatgtg 115
||||||||||||||||||||||||||
Sbjct: 61 cacaaaaatgagcacagacagatgtg 86
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 109 bits (55), Expect = 1e-23
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 71
Query: 101 gca 103
|||
Sbjct: 72 gca 74
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 107 bits (54), Expect = 4e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 35 ctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaa 94
|||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 6 ctgtctgtgtcattcttgtggtttgcaactagtagtctggctccagttgcatagtcacaa 65
Query: 95 aaatga 100
||||||
Sbjct: 66 aaatga 71
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 83.8 bits (42), Expect = 6e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 43 gtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaa 67
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 1 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 60
Query: 90 cacaaaa 96
|||||||
Sbjct: 61 cacaaaa 67
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
|||||| ||| |||||||||||||| ||||||||||||| || | |||||||||||||
Sbjct: 1 cacagccgtcagtgtcatttttgtgatttgcagctagtaatcctggcccagttgcatagt 60
Query: 90 cacaaaa 96
|||||||
Sbjct: 61 cacaaaa 67
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 50.1 bits (25), Expect = 9e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
