miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01895;mir-193;BX663498.9/9090-8989 7955:Danio rerio (zebrafish)
Length = 102
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gaaagtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gaaagtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactgg 66
Query: 61 cctacaaagtcccagttttcggcccatgtgaccatc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 67 cctacaaagtcccagttttcggcccatgtgaccatc 102
>RF01895;mir-193;AANH01003096.1/75841-75740 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 5 gtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactggccta 64
|||||| |||||||||||||||||||||||||||||| | | ||| |||||||||||||
Sbjct: 11 gtgtgttagaggctgggtctttgcgggcaaggtgagtcctacatttgttcaactggccta 70
Query: 65 caaagtcccagttttcggcccatgtgacca 94
|||||||||||||| ||| ||||||||||
Sbjct: 71 caaagtcccagtttctggctcatgtgacca 100
>RF01895;mir-193;BAAF04031349.1/1289-1188 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 103 bits (52), Expect = 4e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 11 cagaggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagt 70
||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 17 cagaggctgggtctttgcgggcaaggtgagtcctccattcattcaactggcctacaaagt 76
Query: 71 cccagttt 78
||||||||
Sbjct: 77 cccagttt 84
>RF01895;mir-193;CAAB01000713.1/34967-35068 31033:Takifugu
rubripes
Length = 102
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 5 gtgtgtcagaggctgggtctttgcgggcaaggtgagttttccttttattcaactggccta 64
|||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct: 11 gtgtgtcagaagctgggtctttgcgggcaaggtgagtcctcagtttgttcaactggccta 70
Query: 65 caaagtcccagt 76
||||||||||||
Sbjct: 71 caaagtcccagt 82
>RF01895;mir-193;AADN02030009.1/500-602 9031:Gallus gallus
(chicken)
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 15 ggctgggtctttgcgggcaaggtgagttttccttttattcaactggcctacaaagtccca 74
|||||||||||||||||| || |||| | | | | |||||||||||||||||||||||
Sbjct: 21 ggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaaagtccca 80
Query: 75 gttttcggc 83
||| |||||
Sbjct: 81 gttctcggc 89
>RF01895;mir-193;CAAK05050431.1/18938-19042 7955:Danio rerio
(zebrafish)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 tgtgtcagaggctgggtctttgcgggcaaggtgagt-tttcctttta--ttcaactggcc 62
||||| ||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 12 tgtgttagaggttgggtctttgcgggcaaggtgagtagttaaatttactctcaactggcc 71
Query: 63 tacaaagtcccagttt 78
||||||||||||||||
Sbjct: 72 tacaaagtcccagttt 87
>RF01895;mir-193;ABQO011024331.1/609-510 9315:Macropus eugenii
(tammar wallaby)
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 51 attcaactggcctacaaagtcccagttttcgg 82
||||||||||||||||||||||||||| ||||
Sbjct: 54 attcaactggcctacaaagtcccagttctcgg 85
>RF01895;mir-193;AAFR03044744.1/21764-21665 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcgg 82
|||||||||||||||||||||||||| ||||
Sbjct: 55 ttcaactggcctacaaagtcccagttctcgg 85
>RF01895;mir-193;ABRP01134350.1/232-133 132908:Pteropus vampyrus
(large flying fox)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 attcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||||
Sbjct: 54 attcaactggcctacaaagtcccagt 79
>RF01895;mir-193;AANU01121342.1/16348-16249 9544:Macaca mulatta
(rhesus monkey)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttttcggcccatgtgacca 94
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 56 tcaactggcctacaaagtcccagtcctcggcccccgtgacca 97
>RF01895;mir-193;ABRO01253416.1/598-499 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 55 ttcaactggcctacaaagtcccagtcctcggccc 88
>RF01895;mir-193;ABRQ01070765.1/8182-8083 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 55 ttcaactggcctacaaagtcccagtcctcggccc 88
>RF01895;mir-193;AAWZ01016511.1/69007-69110 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagttttcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 59 ttcaactggcctacaaagtcccagtcctcggccc 92
>RF01895;mir-193;CAAA01067610.1/28843-28744 10090:Mus musculus
(house mouse)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaactggcctacaaagtcccagt 76
|||||||||||||||||||||||||
Sbjct: 55 ttcaactggcctacaaagtcccagt 79
