miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 40 aggtattggcgtgcctcaatttgaagacatggtta 74
|||||||||||||||||||||| ||||||||||||
Sbjct: 10 aggtattggcgtgcctcaatttaaagacatggtta 44
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 38 caaggtattggcgtgcctcaatttgaagacatgg 71
||||||||||||| ||||||||||||| ||||||
Sbjct: 8 caaggtattggcgcgcctcaatttgaatacatgg 41
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 73/87 (83%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 38 caaggtattggcgtgcctcaatttgaagacatggtt----aagatgaaaaccagccatgt 93
|||||||||| || | |||||||||||||||||| | || |||||||||| |||||
Sbjct: 8 caaggtattgacgcgtctcaatttgaagacatggctggctaacatgaaaaccaatcatgt 67
Query: 94 aattttaattgagccgcgtcaatatct 120
| ||| | |||||||||||||||||||
Sbjct: 68 agtttga-ttgagccgcgtcaatatct 93
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 86 agccatgtaattttaattgagccgcgtcaatatctc 121
||||||||||||| | ||||||||||||||||||||
Sbjct: 61 agccatgtaatttga-ttgagccgcgtcaatatctc 95
