miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 93.7 bits (47), Expect = 1e-18
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 68
Query: 86 ggatcccacag 96
|||||||||||
Sbjct: 69 ggatcccacag 79
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 177 ccttctttggattgaagggagctctaca 204
|||| |||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 85.7 bits (43), Expect = 2e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | |||
Sbjct: 9 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 68
Query: 86 ggatcccacag 96
|||||||||||
Sbjct: 69 ggatcccacag 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 177 ccttctttggattgaagggagctctacacc 206
|||| |||||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctacacc 186
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 86 ggatcc 91
||||||
Sbjct: 69 ggatcc 74
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctacaccc 207
||||||||||||||||||||| ||||
Sbjct: 154 tttggattgaagggagctctaaaccc 179
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 61.9 bits (31), Expect = 4e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 30 gagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggat 89
||||||||||||||||||| |||||| || | |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 90 cccacag 96
||||||
Sbjct: 73 tccacag 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 177 ccttctttggattgaagggagctctacacc 206
|||| |||||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctacacc 186
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctctaca 204
|||||||||||||||||||||||||||
Sbjct: 168 cttctttggattgaagggagctctaca 194
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 54.0 bits (27), Expect = 9e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 30 gagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggat 89
||||||||||||||||||| || | || | |||||| || |||||||| ||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 90 cccacag 96
|||||||
Sbjct: 61 cccacag 67
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctct 201
||||||||||||||||||||||||
Sbjct: 172 cttctttggattgaagggagctct 195
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
|||||||||||||||||||||| || ||||| || || | ||||||||||| | ||||
Sbjct: 9 agtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctat 68
Query: 86 ggat 89
||||
Sbjct: 69 ggat 72
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctaca 204
|||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctaca 190
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 183 ttggattgaagggagctctacacc 206
||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacc 182
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
