miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 99.6 bits (50), Expect = 6e-21
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 7 ttgacagaagagagagagcacaacccgggaat-ggctaaaggagtctttgcctttgttgg 65
|||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||
Sbjct: 1 ttgacagaagagagagagcacaacccggcattaggctaaag-agtctttgcctttgttgg 59
Query: 66 gagtgtgccctctcttcctctgtcat 91
|||||||| ||||| || ||||||||
Sbjct: 60 gagtgtgctctctcctcttctgtcat 85
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 tgacagaagagagagagcacaacccgg 34
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaacccgg 28
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tgacagaagagagagagcacaaccc 32
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaaccc 26
