miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01945;mir-1388;CAAK05047510.1/17172-17070 7955:Danio rerio
(zebrafish)
Length = 103
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 tgatggatgagcagtgctttccaggactgtccaacctgagaatgcttgagttttggtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatggatgagcagtgctttccaggactgtccaacctgagaatgcttgagttttggtcaa 60
Query: 61 tctcaggttcgtcagcccatgaaaaactgtctcgctcaaagcc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcaggttcgtcagcccatgaaaaactgtctcgctcaaagcc 103
>RF01945;mir-1388;CAAB01001071.1/76021-76119 31033:Takifugu
rubripes
Length = 99
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 17 ctttccaggactgtccaacctgagaatgcttgagttttgg-tcaatctcaggttcgtcag 75
||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||||||
Sbjct: 13 ctttctaggactgtccaacctgagaatg-ttgattttgggctcaatctcaggttcgtcag 71
Query: 76 cccatgaaa 84
|||||||||
Sbjct: 72 cccatgaaa 80
>RF01945;mir-1388;BAAE01163800.1/1828-1724 8090:Oryzias latipes
(Japanese medaka)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 14 gtgctttccaggactgtccaacctgagaatgcttgagttttgg-tcaatctcaggttcgt 72
|||||||| |||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct: 14 gtgctttctaggactgtccaacctgagaatg-ttggtttaaggctcaatctcaggttcgt 72
Query: 73 cagcccatgaaa 84
||||||||||||
Sbjct: 73 cagcccatgaaa 84
>RF01945;mir-1388;AAPN01132708.1/7352-7452 9258:Ornithorhynchus
anatinus (platypus)
Length = 101
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagcccatgaaa 84
||||||||||||||||||||||||||||||
Sbjct: 56 ggtcaatctcaggttcgtcagcccatgaaa 85
>RF01945;mir-1388;AAVX01069536.1/2346-2444 7868:Callorhinchus
milii (ghost shark)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagcccatgaaa 84
||||||||||||||||||||||||||||||
Sbjct: 55 ggtcaatctcaggttcgtcagcccatgaaa 84
>RF01945;mir-1388;AAPE01370894.1/689-786 59463:Myotis lucifugus
(little brown bat)
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagcccatga 82
||||||||||||||||||||||||||||
Sbjct: 53 ggtcaatctcaggttcgtcagcccatga 80
>RF01945;mir-1388;AAQQ01180093.1/142-41 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 56.0 bits (28), Expect = 9e-08
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 20 tccaggactgtccaacctgagaatgcttgagt---tttggtcaatctcaggttcgtcagc 76
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 17 tccaggactgtccaacctgagaatg-gtgagtgtctagggtcaatctcaggttcgtcagc 75
Query: 77 cc 78
||
Sbjct: 76 cc 77
>RF01945;mir-1388;ABQF01028257.1/27499-27599 59729:Taeniopygia
guttata
Length = 101
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagcccatga 82
||||||||||||||||||||||||||||
Sbjct: 56 ggtcaatctcaggttcgtcagcccatga 83
>RF01945;mir-1388;AAKN02052564.1/25521-25623 10141:Cavia porcellus
(domestic guinea pig)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 20 tccaggactgtccaacctgagaatgcttgagttt--tggtcaatctcaggttcgtcagcc 77
||||||||||||||||||||||||| ||| | | |||||||||||||||| |||||||
Sbjct: 19 tccaggactgtccaacctgagaatg-ttgcatctcctggtcaatctcaggtttgtcagcc 77
Query: 78 c 78
|
Sbjct: 78 c 78
>RF01945;mir-1388;ACBE01091536.1/3001-3102 9685:Felis catus
(domestic cat)
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tccaggactgtccaacctgagaatg 44
|||||||||||||||||||||||||
Sbjct: 19 tccaggactgtccaacctgagaatg 43
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagccc 78
||||||||||||||||||||||||
Sbjct: 54 ggtcaatctcaggttcgtcagccc 77
>RF01945;mir-1388;AAFR03005461.1/109909-109810 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagcccatga 82
||||||||||||||| ||||||||||||
Sbjct: 55 ggtcaatctcaggtttgtcagcccatga 82
>RF01945;mir-1388;ABDC01387137.1/11444-11346 30608:Microcebus
murinus (gray mouse lemur)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ggtcaatctcaggttcgtcagccc 78
||||||||||||||||||||||||
Sbjct: 54 ggtcaatctcaggttcgtcagccc 77
>RF01945;mir-1388;AANN01778600.1/886-984 9365:Erinaceus europaeus
(western European hedgehog)
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tcaatctcaggttcgtcagccca 79
|||||||||||||||||||||||
Sbjct: 53 tcaatctcaggttcgtcagccca 75
>RF01945;mir-1388;AAFC03042420.1/16149-16252 9913:Bos taurus
(cattle)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 caggactgtccaacctgagaatg 44
|||||||||||||||||||||||
Sbjct: 21 caggactgtccaacctgagaatg 43
>RF01945;mir-1388;AANH01014005.1/7376-7275 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tcaatctcaggttcgtcagccca 79
|||||||||||||||||||||||
Sbjct: 57 tcaatctcaggttcgtcagccca 79
>RF01945;mir-1388;AAEX02023830.1/2173-2259 9615:Canis lupus
familiaris (dog)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tccaggactgtccaacctgaga 41
||||||||||||||||||||||
Sbjct: 11 tccaggactgtccaacctgaga 32
>RF01945;mir-1388;ABRQ01259480.1/1612-1514 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tccaggactgtccaacctgagaatgc 45
|||||||||||||| |||||||||||
Sbjct: 19 tccaggactgtccagcctgagaatgc 44
