miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/77264-77379 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 74 tcttaatgtgcaatctgccaaaggagatttgcccagcgattctcc 118
||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 71 tcttagtgtgcaatctgccaaagaagatttgcccagcgattctcc 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 attacagggcaagttctccattggcaggtagc 38
||||||||| |||||||||||||||||||||
Sbjct: 7 attacagggtgagttctccattggcaggtagc 38
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 75 cttaatgtgcaatctgccaaaggagatttgcccagcgattctc 117
|||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 71 cttagtgtgtaatctgccaaaggagatttgcccagcgattctc 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 attacagggcaagttctccattggcaggtagc 38
||||||||| |||||||||||||||||||||
Sbjct: 7 attacagggtgagttctccattggcaggtagc 38
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 86 atctgccaaaggagatttgcccagcgattc 115
||||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgattc 115
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagttctccattggcaggtagccacta 43
|||||||||||||||| ||||||||||||| ||||||||
Sbjct: 4 tgcattacagggcaagacctccattggcaggcagccacta 43
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagt-tctccattggcaggtagccact 42
||||||||||||||| | ||||||||||||||||||||||
Sbjct: 4 tgcattacagggcaaatatctccattggcaggtagccact 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 87 tctgccaaaggagatttgcccagcgattct 116
|||||||||||||||||||||||| |||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattct 117
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 5 gcattacagggcaagttctccattggcaggtagcca 40
||||||||||||| ||||||| ||||||||||||||
Sbjct: 5 gcattacagggcatgttctcctttggcaggtagcca 40
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 ctgccaaaggagatttgcccagcgattctcc 118
||||||||||||||||||||||| |||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattctcc 115
>RF00445;mir-399;AASG02001979.1/28308-28190 3988:Ricinus communis
(castor bean)
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagt-tctccattggcaggtagccact 42
|||||||||| |||| | ||||||||||||||||||||||
Sbjct: 4 tgcattacagagcaaatatctccattggcaggtagccact 43
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tctgccaaaggagatttgcccagc 110
||||||||||||||||||||||||
Sbjct: 69 tctgccaaaggagatttgcccagc 92
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tctgccaaaggagatttgcccagc 110
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 ctgccaaaggagatttgcccagc 110
|||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagc 98
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 ctgccaaaggagatttgcccagc 110
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 ctgccaaaggagatttgcccag 109
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atctgccaaaggagatttgccc 107
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tgcattacagggcaagttctccattggcag 33
|||||||||||||||| || ||||||||||
Sbjct: 4 tgcattacagggcaagatcaccattggcag 33
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tctgccaaaggagatttgcccagcgattct 116
||||||||||||||||||||| || |||||
Sbjct: 84 tctgccaaaggagatttgcccggcaattct 113
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 ctgccaaaggagatttgcccagcgat 113
|||||||||| |||||||||||||||
Sbjct: 52 ctgccaaaggggatttgcccagcgat 77
