miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 117 gctcatgcactgcctcttccctggctctgtctc 149
|||||||||||||||||||||||||||||||||
Sbjct: 114 gctcatgcactgcctcttccctggctctgtctc 146
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 34 gggaacaggcagagcatggatggagctatcaacacaata 72
||||| |||||||||||||||||||||||||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaacaaaata 61
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 105 tgttgtggttctgctcatgcactgcctcttccctggc 141
|||||||| ||| ||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 120 catgcactgcctcttccctggctctgtctc 149
||||||||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctctgtctc 115
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus
trichocarpa
Length = 119
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 33 ggggaacaggcagagcatggatggagcta 61
|||||||||||||||||||||||||||||
Sbjct: 21 ggggaacaggcagagcatggatggagcta 49
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 catgcactgcctcttccctggct 142
|||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggct 101
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 105 tgttgtggttctgctcatgcactgcctcttccctggct 142
|||||||| || |||||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 120 catgcactgcctcttccctggctc 143
||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctc 109
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tgcactgcctcttccctggctct 144
|||||||||||||||||||||||
Sbjct: 86 tgcactgcctcttccctggctct 108
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tgcactgcctcttccctggctc 143
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tgcactgcctcttccctggctc 143
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tgcactgcctcttccctggctc 143
||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tgcactgcctcttccctggctc 143
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
