miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 194 bits (98), Expect = 3e-49
Identities = 137/156 (87%)
Strand = Plus / Plus
Query: 14 aggaagagacaggacaaaggctgggaacaggcagggcacgaatggagctatcaacagaaa 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaagagacaggacaaaggctgggaacaggcagggcacgaatggagctatcaacagaaa 60
Query: 74 atggtaaagtgagaatggaagnnnnnnnnnnnnnnnnnntctgttgtggctacgctcatg 133
||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 61 atggtaaagtgagaatgaaaggagagagagagagagagatctgttgtggctacgctcatg 120
Query: 134 cactgcctcttccctggctctgtctctttcctattc 169
||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactgcctcttccctggctctgtctctttcctattc 156
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 114 ctgttgtggctacgctcatgcactgcctcttccctggct 152
||||||||||| | |||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 130 catgcactgcctcttccctggctctgtctct 160
|||||||||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctctgtctct 116
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 115 tgttgtggctacgctcatgcactgcctcttccctggc 151
|||||||||| ||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 18 agagacaggacaaaggctgggaacaggcagggcacgaatggagctatcaaca 69
||||||| ||||| ||| ||||| |||||| ||| | |||||||||||||||
Sbjct: 5 agagacaagacaatggcagggaagaggcagagcatggatggagctatcaaca 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 132 tgcactgcctcttccctggctctgtctctttc 163
||||||||||||||||||||||| ||| ||||
Sbjct: 86 tgcactgcctcttccctggctctctctttttc 117
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 130 catgcactgcctcttccctggctc 153
||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctc 109
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 130 catgcactgcctcttccctggct 152
|||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggct 101
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 tgcactgcctcttccctggctc 153
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 tgcactgcctcttccctggctc 153
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 tgcactgcctcttccctggctc 153
||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 tgcactgcctcttccctggctc 153
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
