miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AANH01009585.1/5625-5558 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 68
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 4 gttgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gttgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactggg 62
Query: 64 tctc 67
||||
Sbjct: 63 tctc 66
>RF00651;mir-221;BAAF04018090.1/2115-2182 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 5 ttgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactgggt 64
||||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 4 ttgctcagtagtcagtgtagatcctgtggggctgacagcagctacatctggctactgggt 63
Query: 65 ctc 67
|||
Sbjct: 64 ctc 66
>RF00651;mir-221;AADN02010980.1/16388-16456 9031:Gallus gallus
(chicken)
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 65
Query: 66 tctg 69
||||
Sbjct: 66 tctg 69
>RF00651;mir-221;ABRQ01115829.1/6664-6594 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 63.9 bits (32), Expect = 2e-10
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtg---tagcaatcagcagctacatctggctactggg 63
||||||||| ||||||||||||||| | | |||||| ||||||||||||||||||||
Sbjct: 6 gctcagtagccagtgtagatcctgtcattttgtaatcagtagctacatctggctactggg 65
Query: 64 tctctg 69
||||||
Sbjct: 66 tctctg 71
>RF00651;mir-221;CU550700.7/19683-19747 7955:Danio rerio
(zebrafish)
Length = 65
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 cagcagctacatctggctactgggtctctg 69
||||||||||||| ||||||||||||||||
Sbjct: 36 cagcagctacatccggctactgggtctctg 65
>RF00651;mir-221;AAVX01067207.1/2671-2602 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 cagctacatctggctactgggtctctg 69
||||||||||||| |||||||||||||
Sbjct: 44 cagctacatctggttactgggtctctg 70
