miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 167 bits (84), Expect = 3e-41
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cagcaagaaaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgc 61
Query: 61 ccctaaaaatccttattgctcttgcaat 88
||||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgcaat 89
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| | ||||||||| ||||||||||||||||| | | | |||||||||||
Sbjct: 2 cagcaagaaaaataagggactttcaggggcagctgtgttttctgactcaagtcataatgc 61
Query: 61 ccctaaaaatccttattgctcttgca 86
||||||||||||||||||||||||||
Sbjct: 62 ccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 107 bits (54), Expect = 3e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggactttcaggggcagctgtgttttgtga-ctcagtcataatgc 60
Query: 61 ccctaaaaatccttattgctcttgca 86
|||||||||||||||||| |||||||
Sbjct: 61 ccctaaaaatccttattgttcttgca 86
>RF00659;mir-365;AANG01161851.1/1480-1570 9685:Felis catus
(domestic cat)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 cagcaagaaaagtgagggacttttaggggcagctgtgttttattaacccagtcataatgc 60
||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||||||
Sbjct: 2 cagcaagaaaaatgagggactttcaggggcagctgtgtttt-ctgactcagtcataatgc 60
Query: 61 ccctaaaaatcc 72
||||||||||||
Sbjct: 61 ccctaaaaatcc 72
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 13 tgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaaatcc 72
|||||||||||| ||||||| ||||||| | || | |||||||||||||||||||||
Sbjct: 14 tgagggacttttgggggcagatgtgtttccattacactatcataatgcccctaaaaatcc 73
Query: 73 ttattgctcttgca 86
||||||||||||||
Sbjct: 74 ttattgctcttgca 87
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 52 tcataatgcccctaaaaatccttattgctcttgca 86
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctcttgca 87
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 50 agtcataatgcccctaaaaatccttattgctcttgcaat 88
||||||||||||||||||||||| |||| ||| ||||||
Sbjct: 51 agtcataatgcccctaaaaatccctatttctcatgcaat 89
