miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 9 cttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggctcgcgt 68
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcacgttgagcctcacgtacaatacctgaagatgaagttttgttcgttcggctcgcgt 60
Query: 69 tatgcaggt 77
|| ||||||
Sbjct: 61 tacgcaggt 69
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 75.8 bits (38), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 11 tcacgttgagcctcacgcacaatacctgaagatgaa---gttttgttcgttcggctcgcg 67
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 3 tcacgttgagccacacgcacaatgcctgcagatgaaagggttttgttcgttcggctcgcg 62
Query: 68 ttatgcag 75
||| ||||
Sbjct: 63 ttacgcag 70
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 13 acgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggctcgcgtta 70
|||||||||| |||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 5 acgttgagccacacgcacaatacatgtggattcagttttgttcgttcggctcgcgtta 62
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgttatgcaggt 77
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaggcaggt 69
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgttat 71
|||||||||||||||||||||||||
Sbjct: 44 gttttgttcgttcggctcgcgttat 68
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gttttgttcgttcggctcgcgt 68
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
