miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00750;mir-458;CAAB01001761.1/10078-10153 31033:Takifugu
rubripes
Length = 76
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tgcagacagcagcgccattttcagagctatcagtcaacgtggtcatagctctttaaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcagacagcagcgccattttcagagctatcagtcaacgtggtcatagctctttaaatgg 61
Query: 61 tactgctgtaggcac 75
|||||||||||||||
Sbjct: 62 tactgctgtaggcac 76
>RF00750;mir-458;AANH01006599.1/90205-90129 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 9 gcagcgccattttcagagctatcagtca-acgtggtcatagctctttaaatggtactgc 66
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 10 gcagcgccattttcagagctataagtgtgaagtggtcatagctctttaaatggtactgc 68
>RF00750;mir-458;BX322629.8/12571-12494 7955:Danio rerio
(zebrafish)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 tgcagacagcagcgccattttcagagctatcag--tcaacgtggtcatagctctttaaat 58
|||||| ||||||||||||| ||||||||| || ||| || ||||||||||||| |||
Sbjct: 2 tgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaat 61
Query: 59 ggtactgc 66
||||||||
Sbjct: 62 ggtactgc 69
>RF00750;mir-458;BAAF04063537.1/2161-2085 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgcagacagcagcgccattttcagagctatcagt-caacgtggtcatagctctttaaatg 59
||||||| ||||||||||||||||||||| ||| | ||| | |||||||||| ||||
Sbjct: 2 tgcagactccagcgccattttcagagctataagtgtgaagtgatgatagctctttcaatg 61
Query: 60 gtactgc 66
|||||||
Sbjct: 62 gtactgc 68
>RF00750;mir-458;AADN02066998.1/215-292 9031:Gallus gallus
(chicken)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gcagcgccattttcagagctat 30
||||||||||||||||||||||
Sbjct: 10 gcagcgccattttcagagctat 31
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 gtcatagctctttaaatggtactgc 66
||||||||||||| |||||||||||
Sbjct: 45 gtcatagctctttgaatggtactgc 69
