miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAE01312757.1/678-765 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 1 cagacattcagatgaccttaacataggcactgacttgaatatctttgcagtaagtgctac 60
||||||||||||||||||||||| ||||||||| |||| | | |||||| ||||||||||
Sbjct: 8 cagacattcagatgaccttaacaaaggcactgatttgagtttgtttgcaataagtgctac 67
Query: 61 atgttggggtagtcttggtgt 81
|||||||||||||||||||||
Sbjct: 68 atgttggggtagtcttggtgt 88
>RF01413;miR-430;BAAE01306502.1/488-571 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 99.6 bits (50), Expect = 6e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 cagacattcagatgaccttaacataggcactgacttgaatatctttgcagtaagtgctac 60
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct: 8 cagacattcagatgaccttaacatgggcactgacttgaatttgtttgcagtaagtgctac 67
Query: 61 at 62
||
Sbjct: 68 at 69
>RF01413;miR-430;BAAE01232573.1/815-728 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 49 agtaagtgctacatgttggggtagtcttggtgt 81
||||||||||||||||||||||| | |||||||
Sbjct: 56 agtaagtgctacatgttggggtaattttggtgt 88
>RF01413;miR-430;ACDA01001276.1/512-421 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 cagtaagtgctacatgttgggg 69
||||||||||||||||||||||
Sbjct: 58 cagtaagtgctacatgttgggg 79
