miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAE01312757.1/678-765 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 5 gacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacat 64
||||||||||||||||||||| ||||||||| |||| ||| |||||| ||||||||||||
Sbjct: 10 gacattcagatgaccttaacaaaggcactgatttgagtttgtttgcaataagtgctacat 69
Query: 65 gttggggtagtcttggtgt 83
|||||||||||||||||||
Sbjct: 70 gttggggtagtcttggtgt 88
>RF01413;miR-430;BAAE01306502.1/488-571 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 103 bits (52), Expect = 4e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 5 gacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacat 64
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 10 gacattcagatgaccttaacatgggcactgacttgaatttgtttgcagtaagtgctacat 69
>RF01413;miR-430;BAAE01232573.1/815-728 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
|||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct: 17 agatgaccttgacacaggcactgactctttcttctttatagtaagtgctacatgttgggg 76
Query: 72 tagtcttggtgt 83
|| | |||||||
Sbjct: 77 taattttggtgt 88
>RF01413;miR-430;ACDA01001276.1/512-421 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 cagtaagtgctacatgttgggg 71
||||||||||||||||||||||
Sbjct: 58 cagtaagtgctacatgttgggg 79
