miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAF04119956.1/205-290 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 153 bits (77), Expect = 4e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gaatagcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 65
Query: 61 tctttggggttgtctcaatgt 81
|||||||||||||||||||||
Sbjct: 66 tctttggggttgtctcaatgt 86
>RF01413;miR-430;BAAF04126870.1/110-23 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 153 bits (77), Expect = 4e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 gaatcgcttcgaggccacctcaaacagagacactgatggtttttatttcctaagtgcttc 67
Query: 61 tctttggggttgtctcaatgt 81
|||||||||||||||||||||
Sbjct: 68 tctttggggttgtctcaatgt 88
>RF01413;miR-430;BAAE01001319.1/1188-1101 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 153 bits (77), Expect = 4e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 67
Query: 61 tctttggggttgtctcaatgt 81
||||||||||| |||||||||
Sbjct: 68 tctttggggttttctcaatgt 88
>RF01413;miR-430;BAAE01018232.1/429-342 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttcctaagtgcttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8 gaatcgcttcgaggccacctcaaacagagacactgatggttttgatttccaaagtgcttc 67
Query: 61 tctttggggttgtctcaatgt 81
||||||||||| |||||||||
Sbjct: 68 tctttggggttttctcaatgt 88
>RF01413;miR-430;AANH01007365.1/1370-1284 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 17 acctcaaacagagacactgatggtt-ttgatttcctaagtgcttctctttggggttgtct 75
||||||||| |||||||||||| || || | ||| |||||||||||||||||||||||||
Sbjct: 22 acctcaaactgagacactgatgattcttcagttcataagtgcttctctttggggttgtct 81
>RF01413;miR-430;AF420486.1/390-476 13106:Lepomis macrochirus
(bluegill)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 16 cacctcaaacagagacactgatggtt-ttgatttcctaagtgcttctctttggggttgtc 74
||||||||| |||||||||||| || ||| ||| |||||||||||| |||||||||||
Sbjct: 21 cacctcaaatggagacactgatgattcttgtgttcataagtgcttctccttggggttgtc 80
Query: 75 t 75
|
Sbjct: 81 t 81
>RF01413;miR-430;AANH01014756.1/115-207 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taagtgcttctctttggggttgtct 75
|||||||||||||||||||||||||
Sbjct: 63 taagtgcttctctttggggttgtct 87
>RF01413;miR-430;AANH01007362.1/9227-9139 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taagtgcttctctttggggttgtct 75
|||||||||||||||||||||||||
Sbjct: 59 taagtgcttctctttggggttgtct 83
>RF01413;miR-430;AANH01014757.1/10280-10366 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taagtgcttctctttggggttgtct 75
|||||||||||||||||||||||||
Sbjct: 57 taagtgcttctctttggggttgtct 81
>RF01413;miR-430;ACDA01001276.1/768-686 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taagtgcttctctttggggttgtct 75
|||||||||||||||||||||||||
Sbjct: 53 taagtgcttctctttggggttgtct 77
>RF01413;miR-430;CAAB01008374.1/4929-4842 31033:Takifugu rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 aagtgcttctctttggggttgtct 75
||||||||||||||||||||||||
Sbjct: 58 aagtgcttctctttggggttgtct 81
>RF01413;miR-430;AANH01000530.1/166635-166724 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 agtgcttctctttggggttgtct 75
|||||||||||||||||||||||
Sbjct: 62 agtgcttctctttggggttgtct 84
