miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 151 bits (76), Expect = 2e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 2 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagctaa 61
Query: 61 ctatacaacctactgccttccctg 84
||||||||||||||||||||||||
Sbjct: 62 ctatacaacctactgccttccctg 85
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 121 bits (61), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgtgtggtttcagggttgtgatttt-gccccatcaggagctaacta 63
||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 64 tacaacctactgccttccctg 84
|||||||||||||||||||||
Sbjct: 66 tacaacctactgccttccctg 86
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
||||||||||||||||||||||||||||| |||| |||||||||||| ||||| || |||
Sbjct: 2 cagggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagataa 61
Query: 61 ctatacaacctactgccttccctg 84
||||||||| ||||||||||||||
Sbjct: 62 ctatacaacatactgccttccctg 85
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 117 bits (59), Expect = 2e-26
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgtgtggtttcagggttgtgattttgcccc-atcaggagctaact 62
||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 63 atacaacctactgccttcc 81
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 103 bits (52), Expect = 3e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgtggtttcagggttgtgattttgcccc-atcaggagctaactat 64
|||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataactat 66
Query: 65 acaacctactgccttccctg 84
||| ||||||||||||||||
Sbjct: 67 acagcctactgccttccctg 86
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 93.7 bits (47), Expect = 3e-19
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttca-gggttgtgattttgccccatcaggagctaac 61
|||||||||||||||||||||||||||| ||| ||||| ||||||| |||| || ||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccc-tcagaagataac 62
Query: 62 tatacaacctactgccttccctg 84
|||||||||||||||||||||||
Sbjct: 63 tatacaacctactgccttccctg 85
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaact 62
||||||||||||||||||||||||||||||| | | | | ||||| |||| || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccc-tcagcagataact 62
Query: 63 atacaacctactgccttccc 82
||||| ||||||||||||||
Sbjct: 63 atacagcctactgccttccc 82
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaact 62
||||||||||||||||| ||||||||||||| ||||| ||||||| |||| | |||||
Sbjct: 4 gggtgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccc-tcagcaaataact 61
Query: 63 atacaacctactgcctt 79
| |||||||||| ||||
Sbjct: 62 acacaacctacttcctt 78
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaactatac 66
|||||||||||||| | |||| |||| | |||||||||||| ||||| |||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaa-aggagataactatac 66
Query: 67 aacctactgccttccctg 84
||||| ||||||| ||||
Sbjct: 67 aacctgctgcctttcctg 84
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tcaggagctaactatacaacctactgccttcc 81
||||||| |||||||||||| |||||||||||
Sbjct: 53 tcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tcaggagctaactatacaacctactgccttcc 81
||||||| |||||||||||| |||||||||||
Sbjct: 56 tcaggagataactatacaacttactgccttcc 87
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 50 tcaggagctaactatacaacctactgccttccctg 84
||||||| ||||||||||| ||| |||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctg 86
