miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 9 gcagtgtgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtac 68
|||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 1 gcagcgtgaggtagttggttgtatggtttcgcatcataaacagcctggagataactgtac 60
Query: 69 aaccttctagctttccctgc 88
||||||||||||||||||||
Sbjct: 61 aaccttctagctttccctgc 80
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 125 bits (63), Expect = 1e-28
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 12 gtgtgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaac 71
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 4 gtgtgaggtaattggttgtatggtttcgcataataaatagcacggaaataactgtacaac 63
Query: 72 cttctagctttccct 86
|||||||||||||||
Sbjct: 64 cttctagctttccct 78
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccctg 87
||||||||||||||||||| |||||||||||||
Sbjct: 44 ggagataactgtacaacctcctagctttccctg 76
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 gagataactgtacaaccttctagctttccctg 87
|||||||||||||||||| |||||||||||||
Sbjct: 45 gagataactgtacaacctcctagctttccctg 76
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttccctg 87
|||||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttccctg 78
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccctg 87
||||||||||||||| ||| |||||||||||||
Sbjct: 44 ggagataactgtacagcctcctagctttccctg 76
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccctg 87
||||||| ||||||||||| |||||||||||||
Sbjct: 44 ggagatagctgtacaacctcctagctttccctg 76
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccc 85
||||||||||||||| ||| |||||||||||
Sbjct: 45 ggagataactgtacagcctcctagctttccc 75
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 44 ggagataactgtacagcctcctagctttcc 73
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 44 ggagataactgtacagcctcctagctttcc 73
