miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattctag 62
Query: 61 gggagtatat 70
||||||||||
Sbjct: 63 gggagtatat 72
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaatttgtgtgaagaacgctcaatcacagattcgattctag 62
Query: 61 gggagtatat 70
||||||||||
Sbjct: 63 gggagtatat 72
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
|||||||||||||||||||||||| ||||||| || || | ||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaattggtgtgatgaaaccagattcacagattcgattctag 62
Query: 61 ggg 63
|||
Sbjct: 63 ggg 65
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaatttgtgtggtatccacgtagtcacagattcgattctag 62
Query: 61 gggagtatat 70
|||| |||||
Sbjct: 63 gggaatatat 72
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 61.9 bits (31), Expect = 9e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtga 31
|||||||||||||||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 61.9 bits (31), Expect = 9e-10
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
|||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 3 atatgtaccctgtagaaccgaatttgtgtggt-tcgt-acagtcacagattcgattctag 60
Query: 61 ggg 63
|||
Sbjct: 61 ggg 63
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 61.9 bits (31), Expect = 9e-10
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcaca--gtcacagattcgattct 58
|||||||||||||||| |||||||||||||| |||||||| |||||| ||||| |||
Sbjct: 3 atatataccctgtagatccgaatttgtgtga-aaagtcacacggtcacaaattcgtatct 61
Query: 59 aggggagtat 68
||||||||||
Sbjct: 62 aggggagtat 71
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgt 29
|||||||||||||||||||||||||||||
Sbjct: 3 atatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtga 31
|||| ||||||||||||||||||||||||||
Sbjct: 3 atatgtaccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
||||||||||||||||||||||| ||||| || || | ||||||||||| || |||
Sbjct: 3 atatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggttttag 62
Query: 61 gggagtatat 70
||||||||||
Sbjct: 63 gggagtatat 72
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtg 30
|||| |||||||||||||||||||||||||
Sbjct: 3 atatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgt 29
|||| ||||||||||||||||||||||||
Sbjct: 3 atatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgt 29
|||| ||||||||||||||||||||||||
Sbjct: 3 atatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgt 29
|||||||||||||||| ||||||||||||
Sbjct: 3 atatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tatataccctgtagaaccgaatttgtgt 29
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtga 31
|||| |||||||||||| |||||||||||||
Sbjct: 3 atatgtaccctgtagaatcgaatttgtgtga 33
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 accctgtagaaccgaatttgtgt 29
|||||||||||||||||||||||
Sbjct: 9 accctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgtga 31
|||| ||||||||||| ||||||||||||||
Sbjct: 3 atatgtaccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 taccctgtagaaccgaatttgtgtga 31
||||||||||| ||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 ataccctgtagaaccgaatttgtgtg 30
||||||||||||||||||| ||||||
Sbjct: 7 ataccctgtagaaccgaatgtgtgtg 32
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 atatataccctgtagaaccgaatttgtgt 29
|||| ||||||||||| ||||||||||||
Sbjct: 3 atatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 accctgtagaaccgaatttgtgtga 31
|||||||||| ||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtga 33
