miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 7 ctctgctagttttgcatagttgcactacaagaatagaggagttgtgcaaatctatgcaaa 66
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctctgctagttttgcatagttgcactacaagaatagatgagttgtgcaaatctatgcaaa 60
Query: 67 actgatggtggc 78
||||||||||||
Sbjct: 61 actgatggtggc 72
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 8 tctgctagttttgcatagttgcactacaagaatagaggagttgtgcaaatctatgcaaaa 67
|||| ||||||||||||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 2 tctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaa 61
Query: 68 ctgatggtggc 78
|||||||||||
Sbjct: 62 ctgatggtggc 72
>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 7 ctctgctagttttgcatagttgcactacaagaatagaggagttgtgcaaatctatgcaaa 66
||||| |||||||||||||||||||| |||||| ||| | ||||||||||||||||||||
Sbjct: 1 ctctgttagttttgcatagttgcactgcaagaagagatgcgttgtgcaaatctatgcaaa 60
Query: 67 actgatggtggc 78
||||| |||||
Sbjct: 61 gctgatagtggc 72
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 13 tagttttgcatagttgcactacaagaatagaggagttgtgcaaatctatgcaaaactgat 72
||||||||| ||||||| || |||||| | | ||||||||||||||||||||||||||
Sbjct: 7 tagttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactgac 66
Query: 73 ggtggc 78
||||||
Sbjct: 67 ggtggc 72
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttgtgcaaatctatgcaaaactga 71
|||||||||||||||||||||||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56
>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgtgcaaatctatgcaaaactga 71
|||||||||||||||||||||||
Sbjct: 42 tgtgcaaatctatgcaaaactga 64
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tgtgcaaatctatgcaaaactgatggtggc 78
|||||||||| ||||||||||||| |||||
Sbjct: 47 tgtgcaaatccatgcaaaactgattgtggc 76
