miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 135 bits (68), Expect = 9e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 tttggtcagttttgctggtttgcattcagctttgttgctgtgctgtgcaaatccatgcaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggtcagttttgctggtttgcattcagctttgttgctgtgctgtgcaaatccatgcaa 60
Query: 70 aactgact 77
||||||||
Sbjct: 61 aactgact 68
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 10 tttggtcagttttgctggtttgcattcagctttgttgctgtgctgtgcaaatccatgcaa 69
||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||
Sbjct: 1 tttggtcagttttgctggtttgcatccagctttgttaccgcgctgtgcaaatccatgcaa 60
Query: 70 aactgac 76
|||||||
Sbjct: 61 aactgac 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 13 ggtcagttttgctggtttgcattcagctttgttg-ctgt--gctgtgcaaatccatgcaa 69
|||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct: 4 ggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaa 63
Query: 70 aactga 75
||||||
Sbjct: 64 aactga 69
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 11 ttggtcagttttgctggtttgcattcagcttt--gttgc-tgtgctgtgcaaatccatgc 67
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 2 ttggtcagttttgctggtttgcattcagctttaaccagcgtttgctgtgcaaatccatgc 61
Query: 68 aaaactgac 76
|||||||||
Sbjct: 62 aaaactgac 70
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand = Plus / Plus
Query: 12 tggtcagttttgctggtttgcattcagctt----tgttgctgtgctgtgcaaatccatgc 67
||||||||||||||||||||||| |||||| | ||| | ||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcatccagctttaactattg-tttgctgtgcaaatccatgc 61
Query: 68 aaaactga 75
||||||||
Sbjct: 62 aaaactga 69
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 12 tggtcagttttgctggtttgcattcagctttgt--tgctgtgctgtgcaaatccatgcaa 69
|||| |||||||| ||||||||| ||||| | | | || ||||||||||||||||||||
Sbjct: 3 tggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaa 62
Query: 70 aactgact 77
||||||||
Sbjct: 63 aactgact 70
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaactgact 77
||||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactgact 69
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactgact 77
|||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgact 75
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaactga 75
||||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactgac 76
||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgac 74
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaactga 75
||||||||||||||||||||||||||
Sbjct: 40 tgctgtgcaaatccatgcaaaactga 65
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactgac 76
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgac 68
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaactga 75
||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaactga 75
||||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaactga 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tggtcagttttgctggtttgcattcagcttt 42
|||| |||||||||||||||| |||||||||
Sbjct: 3 tggttagttttgctggtttgctttcagcttt 33
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 46 gctgtgcaaatccatgcaaaactga 70
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 48 gctgtgcaaatccatgcaaaactga 72
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactga 73
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactga 73
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 51 gctgtgcaaatccatgcaaaactga 75
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactga 73
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactga 75
|||||||||||||||||||||||||
Sbjct: 47 gctgtgcaaatccatgcaaaactga 71
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaaact 73
||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;BAAE01249018.1/744-824 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactgact 77
|||||||||| ||||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgact 76
>RF00245;mir-19;ABPK01045950.1/308-388 57307:Labeotropheus
fuelleborni
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 gctgtgcaaatccatgcaaaactgac 76
|||||||||| |||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgac 75
>RF00245;mir-19;AAVX01075480.1/1651-1574 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 ctgtgcaaatccatgcaaaactgact 77
||||||||||||| ||||||||||||
Sbjct: 48 ctgtgcaaatccacgcaaaactgact 73
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 53 tgtgcaaatccatgcaaaactgact 77
|||||||||| ||||||||||||||
Sbjct: 34 tgtgcaaatctatgcaaaactgact 58
>RF00245;mir-19;AANH01005996.1/21250-21325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaa 70
|||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaa 64
>RF00245;mir-19;BAAF04054686.1/763-838 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgctgtgcaaatccatgcaaa 70
|||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaa 64
