miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGJ02034255.1/6675-6598 7668:Strongylocentrotus
purpuratus
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 15 cttacgtgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacag 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacgtgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacag 60
Query: 75 cctgctagctttccttgg 92
||||||||||||||||||
Sbjct: 61 cctgctagctttccttgg 78
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgc 79
||||||||||||||| |||||||| ||||||||| || || ||||||| |||| ||| |
Sbjct: 6 gtgaggtagtaggttgtatagtttagagatacac-catgggagatagctgtacaacctcc 64
Query: 80 tagctttcc 88
|||||||||
Sbjct: 65 tagctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 54.0 bits (27), Expect = 4e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 21 tgaggtagtaggttatatagtttggagatacactcaatggcgatagctatacagcctgct 80
|||||||||||||| |||||||| || |||| |||| || |||| || |||||||| ||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattaca-tcaagggagataactgtacagcctcct 65
Query: 81 agctttccttg 91
|||||||||||
Sbjct: 66 agctttccttg 76
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgga 46
||||||||||||||| |||||||||||
Sbjct: 5 gtgaggtagtaggttgtatagtttgga 31
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 gtgaggtagtaggttatatagtttgg 45
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
