miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 6 accagtggagaaaaggcaagatgttggcatagctgtgatttaaatattaacccagctgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accagtggagaaaaggcaagatgttggcatagctgtgatttaaatattaacccagctgtg 60
Query: 66 tcttcatactgccatttattcac 88
|||||||||||||||||||||||
Sbjct: 61 tcttcatactgccatttattcac 83
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 tggagaaaaggcaagatgttggcatagctgt 41
|||||| ||||||||||||||||||||||||
Sbjct: 6 tggagagaaggcaagatgttggcatagctgt 36
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aaggcaagatgttggcatagctgt 41
||||||||||||||||||||||||
Sbjct: 13 aaggcaagatgttggcatagctgt 36
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aaggcaagatgttggcatagctg 40
|||||||||||||||||||||||
Sbjct: 13 aaggcaagatgttggcatagctg 35
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctgt 41
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgt 36
>RF00661;mir-31;ABEP02037830.1/78220-78140 7739:Branchiostoma
floridae (Florida lancelet)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaaaaggcaagatgttggcatagctgt 41
|||| ||||||||||||||||||||||
Sbjct: 10 gaaatggcaagatgttggcatagctgt 36
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;CAAK05021429.1/259-339 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgt 41
||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgt 36
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgt 41
||||||||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgt 22
