miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;AAGJ02132973.1/12655-12723
7668:Strongylocentrotus purpuratus
Length = 69
Score = 137 bits (69), Expect = 3e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 16 tccgttgattgtccgaacgcaattcttgttgaatttcctagtcaagaactgtgtacggac 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccgttgattgtccgaacgcaattcttgttgaatttcctagtcaagaactgtgtacggac 60
Query: 76 atcagtggt 84
|||||||||
Sbjct: 61 atcagtggt 69
>RF00251;mir-219;AAVX01354092.1/545-473 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 tgattgtccgaacgcaattcttgttgaattt 51
|||||||||||| ||||||||||| ||||||
Sbjct: 6 tgattgtccgaatgcaattcttgtggaattt 36
>RF00251;mir-219;ABEP02034803.1/1504-1571 7739:Branchiostoma
floridae (Florida lancelet)
Length = 68
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 tgattgtccgaacgcaattcttgttga 47
||||||||| |||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgttga 32
>RF00251;mir-219;AANI01017339.1/197168-197098 7244:Drosophila
virilis
Length = 71
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 tgattgtccgaacgcaattcttgttga 47
||||||||| |||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgttga 32
>RF00251;mir-219;BX088597.18/18564-18638 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AJ506968.1/8189-8258 31033:Takifugu rubripes
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AANH01001091.1/47038-46966 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;BAAF04001368.1/1865-1938 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;BAAE01251032.1/4888-4958 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;BAAE01153842.1/2224-2151 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gttgattgtccgaacgcaattcttgt 44
||||||||||| ||||||||||||||
Sbjct: 4 gttgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAZO01005883.1/1118-1050 121224:Pediculus humanus
corporis (human body louse)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ttgattgtccgaacgcaattcttgtt 45
|||||||||| |||||||||||||||
Sbjct: 5 ttgattgtccaaacgcaattcttgtt 30
