miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
          grimshawi
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 tctaccctgtagatccgaatttgtggtac 46
          |||||||||||||||||||||||| ||||
Sbjct: 6  tctaccctgtagatccgaatttgttgtac 34




>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
          mojavensis
          Length = 78

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 tctaccctgtagatccgaatttgtggtac 46
          |||||||||||||||||||||||| ||||
Sbjct: 6  tctaccctgtagatccgaatttgttgtac 34




>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
          willistoni
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 tctaccctgtagatccgaatttgt 41
          ||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgt 29




>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
          castaneum (red flour beetle)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 tctaccctgtagatccgaatttgt 41
          ||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgt 29




>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
          (black-legged tick)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 tctaccctgtagatccgaatttgt 41
          ||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgt 29




>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
          Length = 76

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 75

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taccctgtagatccgaatttgtg 42
          |||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgtg 30




>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
          purpuratus
          Length = 84

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 accctgtagatccgaatttgtg 42
          ||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtg 30




>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 accctgtagatccgaatttgtg 42
          ||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtg 30




>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 accctgtagatccgaatttgtg 42
          ||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtg 30




>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 accctgtagatccgaatttgtg 42
          ||||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgtg 30