miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 218 bits (110), Expect = 2e-56
Identities = 165/181 (91%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 11 ggtaagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccga 70
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 6 ggtaagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctga 65
Query: 71 ctcattcatccaaatgctgagtgaaagcga-agaa--agatactcagcaaatgagtgaat 127
|||||||||||||||| ||||| ||| | |||| | ||||||| |||||||||||||
Sbjct: 66 ctcattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaat 125
Query: 128 gatgcgggagacaaattgattcttaagtgtcctgtacttggactgaagggagctcccttt 187
||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct: 126 gatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttt 185
Query: 188 t 188
|
Sbjct: 186 t 186
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 167 bits (84), Expect = 7e-41
Identities = 155/176 (88%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 13 taagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgact 72
|||||||||||||||||||||||| ||||||| | || ||||| |||||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggattt-aattagctgccgact 65
Query: 73 cattcatccaaatgctgagtgaaagcgaagaaagat-actcagcaaatgagtgaatgatg 131
||||||||||||| |||||| |||| | |||| || ||| ||||||||||||||||
Sbjct: 66 cattcatccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatg 125
Query: 132 cgggagacaaattgattcttaagtgtcctgtacttggactgaagggagctcccttt 187
||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 126 cgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctcccttt 181
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 119 bits (60), Expect = 2e-26
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 116 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 175
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 176 ggagctcccttt 187
||||||||||||
Sbjct: 203 ggagctcccttt 214
Score = 95.6 bits (48), Expect = 2e-19
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 13 taagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgact 72
|||||||||||||||||||||||| ||||||| | || ||||| |||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgact 66
Query: 73 cattcatccaaatgctgagt 92
||||||||||||| ||||||
Sbjct: 67 cattcatccaaatactgagt 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 107 bits (54), Expect = 6e-23
Identities = 141/171 (82%), Gaps = 13/171 (7%)
Strand = Plus / Plus
Query: 15 agagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactca 74
|||||||||||||||||||| | ||||||| |||||| | ||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaat-caattagctgccgactca 68
Query: 75 ttcatccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgg 134
|||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 69 ttcatccaaatgctgaatgtg------------tattcagtaaatgagtgaatgatgcgg 116
Query: 135 gagacaaattgattcttaagtgtcctgtacttggactgaagggagctccct 185
||||||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct: 117 gagacaaattgtatcttaagcttcctgttattggactgaagggagctccct 167
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 97.6 bits (49), Expect = 6e-20
Identities = 144/174 (82%), Gaps = 10/174 (5%)
Strand = Plus / Plus
Query: 14 aagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactc 73
||||||||||||||||||||||| ||||||| || || |||| ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcagtaggattg-aattagctgccgactc 67
Query: 74 -attcatccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgc 132
|||||||||||| ||| || || | ||| ||| |||||| ||||||||||
Sbjct: 68 cattcatccaaatactgtgttaaggac--------tacccagtaaatgattgaatgatgc 119
Query: 133 gggagacaaattgattcttaagtgtcctgtacttggactgaagggagctccctt 186
||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 120 gggagacaaattggatcttaagctccctgtgcttggactgaagggagctccctt 173
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 5e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 110 ctcagcaaatgagtgaatgatgcgggag-acaaattgattcttaagtgtcctgtacttgg 168
|||||||| ||||||||||| ||||||| |||| |||| |||| || ||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 169 actgaagggagctcc 183
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 55 ttcaattagctgccgactcattcatccaaatgctgag 91
||||||| |||||||||||||||||||||||| ||||
Sbjct: 37 ttcaatttgctgccgactcattcatccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 75.8 bits (38), Expect = 2e-13
Identities = 144/176 (81%), Gaps = 5/176 (2%)
Strand = Plus / Plus
Query: 13 taagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgact 72
|||||||||||| ||| |||||||||| | | |||| ||||| |||||| | ||||||
Sbjct: 8 taagagagcttttttcggtccacttatagatagtaatatgattt-aattagttaccgact 66
Query: 73 cattcatccaaatgctgagtgaa-agcgaagaaagatactcagcaaatgagtgaatgatg 131
||||||||||||| |||||| | ||| |||| ||| ||| |||||| ||| |||||
Sbjct: 67 cattcatccaaatactgagttatgagctaagat---tacccagtaaatgaatgagtgatg 123
Query: 132 cgggagacaaattgattcttaagtgtcctgtacttggactgaagggagctcccttt 187
||||||||||||| | |||||| |||| | |||||||||||||||||||||||
Sbjct: 124 cgggagacaaattaaatcttaaacttcctatcattggactgaagggagctcccttt 179
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 116 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 175
|||||| ||||||||||| |||||||||||| |||| | | || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 176 ggagctccct 185
||||||||||
Sbjct: 172 ggagctccct 181
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 164 cttggactgaagggagctccctttttct 191
||||||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctttttct 186
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 55 ttcaattagctgccgactcattcatccaaat 85
||||||||||| |||||||||||||||||||
Sbjct: 49 ttcaattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 165 ttggactgaagggagctccctttttcttttg 195
||||||||||||||||||||| | |||||||
Sbjct: 161 ttggactgaagggagctccctctctcttttg 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 aaatgagtgaatgatgcgggagacaaattg 145
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 159 ctgtacttggactgaagggagctccctttt 188
|||| |||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctttt 190
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 caattagctgccgactcattcatccaaat 85
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 caattagctgccgactcattcatccaaat 85
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 165 ttggactgaagggagctcccttt 187
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 aaatgagtgaatgatgcgggagacaaattg 145
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 caattagctgccgactcattcatccaaat 85
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 aaatgagtgaatgatgcgggagacaaattg 145
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 159 ctgtacttggactgaagggagctcccttt 187
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 attagctgccgactcattcatccaaa 84
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 159 ctgtacttggactgaagggagctcccttt 187
|||| ||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttt 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 taagagagctttcttcagtccacttatggg 42
|||||||||| ||||||||||||| |||||
Sbjct: 8 taagagagctctcttcagtccactcatggg 37
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 cttggactgaagggagctccctttt 188
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 caattagctgccgactcattcatccaaatgctgagt 92
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 159 ctgtacttggactgaagggagctccctt 186
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 attagctgccgactcattcatccaaa 84
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 cttggactgaagggagctccctt 186
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 cttggactgaagggagctccct 185
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 aattagctgccgactcattcat 79
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 cttggactgaagggagctccct 185
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 aattagctgccgactcattcatccaaatgc 87
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 aattagctgccgactcattcatccaaatgc 87
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 aattagctgccgactcattcatccaaatgc 87
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
